Gene detail

Gene detail information of Glyur000177s00010891

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22930.1	2.00E-10	Protein of unknown function (DUF1635)
NR	XP_003556310.1	1.27E-106	PREDICTED: AT-rich binding protein-like [Glycine max]
trEMBL	tr\|I1NHT4\|I1NHT4_SOYBN	5.00E-107	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G33550.1}

Sequence

Transcript Sequence

>Glyur000177s00010891.1
CGCCGCTACCTAAAAAGGTTTAATATGAAGAGGATTAGGGTACAAGTTGGACCATTGAAATGAAATCACATTCCCTCTCCCTACCCNCCACCGAATTTTAGTAGTCCTTCATGGTGCCTATGTGTACAAAGCTAAATGCACTTACCATTAGGCCTTTGCGCTTTAAATTTTTGGCCTTTTCTGTCCTTTTTCCAACTCCATGTCCCATGAAATAAAGTNAAGGCAAGAATAAAAGGAAAGTAGGCACAAGGATAGTACTACAACAATATTCCTGACTTGAAGATCCAAGACAGATATTCTCCCTCCCTCCTACCTCCCCTCTCTGAGTNAGACCCCTGCAACAAAATGGAATATGAATGTAGCCCTCTTAGCTGGGAATTCTATTACCAGGAAGAGGGGTTAGAGGACTTGAAGCATTCTCTTCTGTACACAACCTTGGAGCTAGAAGCAACTATTGTGTCAGCTAAGGAGGAGATTACCAGAAAAGAATGTGAATTGATCCAAGCCAATGACCTTTTAAGCAGGGTCATCAAAGAGAGAGATGAAGCCCAAGCACAATTCCAGAAGCTAATGCTGGAAAAACTAGAGCTCCAACAAGAGCTTCAGCAACAGCAACAGCAACAACTTGTTCAAACCCATCAACAACAACAAAGAGACACTAAATCACAGAGTACTGAAAATGACCCACAACAAGGTGGCATCTCTGAGAAGCATTCTTCACCAACTGCTTCTTCTGATTGTTGTGGTGAAGAAAACAGCATGCCCTCTCCTGATGGCAGTTCAACCCCACATCCAACAACACCACTGCAAGCAGTGCTAGAATTAGCACAAAAGAAACCATTACCAGAGAAAGGTAAGCTCTTGAAGGCAGTGGTAGAAGCTGGACCACTGCTGCAGACCCTTCTCCTGGCTGGACCACTCCCACAATGGCAACACCCACCTCCACAACTCAACTCCATTGAGATCCCTCCAGTGGCCATTTCATCCCCAAAAAATCCCTCCCTACTACCCCATCAAGACTCTAGCAACAAGACTCTCTCTTTCAGCAAGAAGAGGGATCTTGATCCTGTCCCATCTTCAGGCTCTGACTGTCCTGTAATTTCAAAGTGTAGAAAGGTCATTCAGAACTTACCCCAAACACCTACCACTGCCTCACATCATTTCCTACCACCACACCCATCATTTTCATAATGTTTCATTCTGCAAAAAGCAAAATCAGAATGGGAACAGACAGGTGGCCAGTGTGTATCACCTCAACTTTGTCCCCATATCAACAAACCCTGACCTACTTTTGTATGCTGCAAAAGGAGACTCTCAATTGTCAACATTTTGATGTTTCCCTAATCTCATGTTGTTATTATGTGTATATATATTTGGTGAAGTCAAGTGAGGTTAAATTCTCACAAGAATTGTTAGGAATTGAGTAACCTGGTCTAAGTTATGGCACAATTTTGTACTGTGGTAAAAAGGAGGTGGTGTATGTAACCATTAACCAAGCTTCAAATGGCATGGTTTTAATTTAATTGAAGGATATTGTTGTGTTCGTGCTATTTTCCAAAAGGTGTTGCTTTCCATGCTTAGTAGAATAATAATGAGACCTGAGGATGAGCAGGACCGGCAAGCAATCATGGAAAAAGATCCTCTCTATTTTTTTTTTCTATATTTTTTTCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00177	37147	38933	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000177s00010891.1	PF07795.6	DUF1635	19	215	1.40E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	52.737
SRR1783600	control	53.027
SRR1783602	moderate drought stress	8.251
SRR1811619	moderate drought stress	8.066

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.903
DRR006520	Root Summer glycyrrhizin high producing strain	40.484
DRR006521	Root Winter glycyrrhizin high producing strain	0.066
DRR006522	Root Winter glycyrrhizin high producing strain	0.063
DRR006523	Root Summer glycyrrhizin low producing strain	9.299
DRR006524	Root Summer glycyrrhizin low producing strain	9.442
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.333
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.331

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.478
SRR2868004	Drought Stress (root)	1.089
SRR2967015	Control (root)	1.767

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.176
SRR9715740	Leaf	0.038
SRR9715741	Leaf	0.000
SRR9715739	Root	2.473
SRR9715742	Root	0.440
SRR9715743	Root	1.058

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.062
SRR8749028	MeJA induced 9h	0.200
SRR8749029	MeJA induced 9h	0.621
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.402
SRR8400027	Control - Root	29.104