Gene detail

Gene detail information of Glyur000177s00010890

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04320.2	2.00E-17	Shugoshin C terminus
NR	XP_003555480.2	0	PREDICTED: shugoshin-1-like [Glycine max]
Swissprot	tr\|Q4QSC8\|SGO1_MAIZE	2.00E-15	Shugoshin-1
trEMBL	tr\|K7N4H6\|K7N4H6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G33560.3} (Fragment)

Sequence

Transcript Sequence

>Glyur000177s00010890.1
TGCTATTCATTTTAGAGTGACTGTGACGATCTCGGTTTTGAGTTTCCCTACTCTGAATCGAGAGAGGAAGATAGACAGTGTCTGTGTGAGTGTGTGTGTGGAAATGGAAGGTGGTGGCAATGGCATCTTCCCTGTCTCAGATTTGGAGCCTTGCGGTACCTTTGGAGTTGCAGGTCAAAAAGCAAAGAGAGGGAAAGTGGTGAAGGGAGATTCCGTTTCTGTGGGAGCTGCTCAGAAAAAAATGCTGGCTGACATAACCAACCTGGACCAACACCAACACCGCCTACAACCCTCTAACCAACAACCAAAGCACCACCCTGCACCTGCACCTGATGTCTCTGCTGATGTGCTTCTCAAGGAAAATGCAATGTTGATGAAGCTCCTAGCTAACAGAAACGCAATGATAGAATCGTGTAAAGCAGAGCTAGAAAAGTGTCAAAGCAATTTTCAGAAACTGCGGAAGCAAAATTCAGAACTTGCCCTAACAAATAGTCAAATGATGGCGGAGCTTAATTCAAGTAGACAGAAGATAAGGGAACTTCTGCTTGAACTGGGAAGCAAAAATGGTGTACTCAAAGCTATGAAATTAGAATTGATGGAAAAAGAGCACACAGCAAAGTTGAAGCGTGAAATTGATGCAAATGAGGTTGGAGCATCTCAGAGTAAGCAGTCAGATCAAACATTTCAAGAAGATAACAGGGGAGAAGCAAAAAGGAAGAGAGTCTCCAAATCTCAATCTTCTGCACCTGCTGTTGTTAAACAAGTCAAATCCACAATAAAGGGTGACAATCAAAGGCGGCAATCTTTGAGAAGGCAATCTGCAGGGTTGAAAGNTGAAAAACCAGGACCAGCAGAAGACGTCTTTGAGGTAGATGAAATCAAATATGATGCCTCACATCTACAAGAAAATTTGGCAAATGAAAATGGACCGACATCATTAGGATCCAAAGTTCAGGAAGAAGCCAGAGAAGACACTGAATCTTCAGGACCTACTAACACTGAACAAGTGCAGGCCAAAAAGAATATTGAATGGAAAAGGCATAGTTTGAGAAGACAATCTGCCAGGTTCAGGCCTGAAAATCCAGAGCCAACTGAAGACTTTTTTGATATAGACAANGCAAATTTTGCAGTCTCCGATTCATGTGATGATATGTCAGAAAAAAGTCTTCCAACAACATCAAGTGTAACTTCTGGACAAGAAAACAATGCTTTTAAGTTTGATCCNCAGGAAACTCGAAGATCATCAGTTGGGCGACCTCTGCGTCGATCGGTTGAGAAGGTTCAGTCCTATAAGGAAATTCCACTAAACGTGAAGATGCGCAGAGGTAATTGAGTCATTCTCACTGAATTATCAGTAACATTGTAAAGAAGAATGGAGTGGAAACTTGAAAGCATGTGGAAACTTGAAAGCATGATAAGCCCTACATCCTGTTGCTATAGTGCATGGTGATAGGTTTTATTGATTTTTTTTGAATAGCTTCTTGTTCATGATTGAAATCTGATGTACGTCTATTATAATCATTTTTAGATGATTTGATCCACTCAAATGATATCTCCCCCCCCCCCCCCTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00177	25821	28827	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0045132 meiotic chromosome segregation

cellular_component

GO:0000775 chromosome, centromeric region

GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000177s00010890.1	PF07557.6	Shugoshin_C	382	408	1.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.422
SRR1783600	control	2.498
SRR1783602	moderate drought stress	1.640
SRR1811619	moderate drought stress	1.652

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.894
DRR006520	Root Summer glycyrrhizin high producing strain	3.776
DRR006521	Root Winter glycyrrhizin high producing strain	0.762
DRR006522	Root Winter glycyrrhizin high producing strain	0.703
DRR006523	Root Summer glycyrrhizin low producing strain	0.968
DRR006524	Root Summer glycyrrhizin low producing strain	0.907
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.039
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.086

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.443
SRR2868004	Drought Stress (root)	6.412
SRR2967015	Control (root)	8.371

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.919
SRR9715740	Leaf	2.644
SRR9715741	Leaf	2.174
SRR9715739	Root	0.046
SRR9715742	Root	0.348
SRR9715743	Root	0.811

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.762
SRR8749028	MeJA induced 9h	7.385
SRR8749029	MeJA induced 9h	7.708
SRR8749030	Uninduced	0.592
SRR8749031	Uninduced	0.646
SRR8749032	Uninduced	0.635

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.619
SRR8400027	Control - Root	5.226