Gene detail

Gene detail information of Glyur000177s00010889

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52490.1	1.00E-167	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
NR	XP_007144231.1	0	hypothetical protein PHAVU_007G138900g [Phaseolus vulgaris]
Swissprot	tr\|P42730\|CLPB1_ARATH	4.00E-14	Chaperone protein ClpB1
trEMBL	tr\|V7BFA4\|V7BFA4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW16225.1}

Sequence

Transcript Sequence

>Glyur000177s00010889.1
GCTTTTGATAATCCACATACCTTTTGCATGTCCAAGAAAGAAAGAGAAAGTTGCATATATATCACAACCAAAACCACTTTCTTATAAAAAGCCAAAATTTATAACCTNACTGACAAGAAAGGCACAAAACCCACACAATATCTATCTATCTTGCACACCCTTGCTTTAAGTGCACCAAACCAAATATAAACCATCATATGCATATATCTGCATCCTCCTAAGCTAGTAGTAGCCTTTGTTTTGTACTCTCCTAATTTCAATTCAAACCAAATGAACCTTATTGATATTCCAAAACTCCACTAAGTACTCTGATCTAACCTTTTGTTGTACTACTATATCTGTGTGAGGTGTGAGCTATCATTACTTACTCATAGAGACAATAGTATAGTTGAGAAGATGAGAGGAGGTATTTGCAGTATACAACTTCAGGCTCTGACACCAGAGGCTGCAACAGTTGTGAAACAAGCTGTTAACCTTGCAACAAGAAGGGGTCATGCACAAGTGACCCCTCTCCATGTTGCCAGTGCCATGCTTGCAACTTCCACAGGACTTCTCAGAAAGGCATGCCTTCAGTGCCACTCTCACCCTCTTCAATGCAAGGCACTTGAACTCTGCTTCAATGTTGCACTCAACCGTTTGCCAGCNTCCACTCCAAGCCAAGTACTTTTGGGTGGTCACCCTCAATATTCCACCACTACTACTACTCCTTCACTCTCCAATGCATTGGTTGCAGCCTTCAAACGTGCTCAGGCTCACCAACGCCGTGGATCTATTGAGAATCAGCAGCAACAACAGCATATCTTGGCCTTGAAAATTGAGGTGGAACAGCTTGTAATCTCAATCCTTGATGACCCTAGTGTTAGTAGGGTCATGAGAGAGGCTGGTTTCTCTAGCACCCTTGTGAAAAGCAGGGTTGAACANGCTGTTCCAATGGAAGTTTGTTCAACAAAAGCTCCTATTGATCATAGGAGCCATCCATCCAAAGAAAGCAATATTATTAAGCCTTCTCNTAATTCTCAAGCTCTTGGAGTTGGTAGTTCTAATATCAATATGTCTCCTCCATTATTATCTAGGCCTTTTGGTCAAGTTGGGGGTAATTCTTTTAACAATGATGATGTAACAAGTGTGTTGGGTGAGTTGGTGAAGAGGAGAAGAAACACAGTTATTGTGGGGGAGAGTGTGGCTANTGCTGAGGGGGTAGCTAGGGGAGTGATGGAGAGGTTTGAGGTTGGTAACATTCCTGGGGAGTTGAGGTATGTGCAGGTTGTGAGTCTTCCTCTTGTCTGTTTTAGGAACATTAGCAAGGAGGAAGTTGAACAGAAGCTTGTGGAGGTTAGAAGCCTTGTGAAAAGCTATGTGGGAAGAGGGGTTATTCTCTACTTGGGTGATCTGAAATGGTTGTTTGAGTTCTGGTCNAGTTATTGTGAGCAGAAAANAAACTACCACTACTGTTCTGTGGAGCATATGGTTATGGAGCTTAAAAAATTGGTCAGTGGAAGTGGGGAGAACAGTAGACTGTGGCTTATGGGGATTGCAACTTTTAAAACATACATGAAGTGTAAAATATGTCACCCTTCCCTAGAAANTATTTGGGAGCTTCATCCCTTCACAATTCCTGTTGGCAGCCTGAGCCTCAGTTTAAATTTTGACAGTGATTTTCAAGCTCAAGAGAGAAACAAAGTACTATTCAAGGACGTGCCTTTTGAAGATCATAGAGTAGGAGGAGTTCGAAAGCATCTAACTTGCTGCAGGGATTGCTCAATAAATTTTGAAAATGAAACCCAGAGCATGAGTATAGGCAAGAAAGCTTGCACTTCTAGCTTGCCAGCATGGCTCCAAAATTGTAAGGAAGAGAGAAGTGACATAATGGAAGATCAGGAAAATGCAAGGATGAAGGATCTGTGCAAGAAATGGAACTCAATATGCAATTCAGTACACAAACACCCTTCCATTCTTGAGAAACCAGATTTGTTTGTTTTGTCATCCCCTTCATCACCCACATCTGTTTCCTCACTTGAGGGAAAATCTAACTTGCATCTGAGCCACATAAATTGGTCAATCATTTCTGAACCAGAAAAAGCACCAACTAAAGAATGTGAGTTGTACACTGAAACTGGTGATGATCATTGCTATGATGGCAACTTGATAATGTTCATGCCAGATAGAAATGTGCCTAAACCAGACCTTTTGTCAAATCCCAACTCTAGCCCCAACTCAGCTTCTTCAAGTGAAGCAGTGGAAGGTTTAGAGAGCACTGAAATGTTCAAGGAACTTAATGCTGAGAATCTCAAGATTCTGTGTGATGCCTTGGAGAAGAAGGTTCCACAACATGAAGAAATCATTCCAGAGATTGCAAGTACTGTCCTTCATTGTAGATCAGGAATGAGTAAAAGAGAGAAGAACCACTTGATGAAGAGAGAAGAAGATAGGCAAGAAACTTGGATGTTCTTTCTTGGTGNGAATTCACAAGCCAAAGAGAATATCTCAAGGGAGCTAGCTAAAGTTGTTTTTGGCTCTTATAGTAACTTTGTGACAATTGGCATGAGCTGTTTCTCTTCTTCCCCACTAGGAGATGATTCCACTGATGATGAAAAATCCAAAAGGAAGAGACCAAGAGATGAGTTGGGAAGCACTAGTTATTTGCAGAGGTTTGGGGAAGCAGCCAATGAGAACCCTCATAGGGTGTTCTTCATGGAAGACTTGGAGCAAGTTGATTACTTTACTCAAAAGGGTGTCAAGCAAGCAATAGAAAGTGGAAGTATAACACTTCCTGGTGGTGAATCTATTCCCCTCAAGGATGCCATTGTTGTTTTCAGTAGTGAAAGCTTCAGTTCATCAGTGTCAAGATCTCATGCAAGAAAGTCACCACCATCTTCTGTTGAAATTAACAAAGGGAAAGAGACCATGGATATTGACAAAAGTCCAAGCCTCTCTTTGGATCTGAATATAGCCATTGAAGATGGTGGTAGTACAGACACTGGTATCCTAGAGTTAGTTGATAAGCAAATTAGTTTTAACTTGCAATAACTGTGATAGCAAGGGAGAAATAATATTTTTTCTATGTTAAATGTACGTGGGTGTTACTCTTTTTTTTTTTTTGGTTTTGTTCTCTTCTTGATTGTTTTTCAGCTATACTAAGTGGGGCAAAGAATGACATGATGAATGCAAAATTTTAGATATATTATAGCTTGATANTGTTGACATGCATTAATTTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00177	17364	20812	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0019538 protein metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000177s00010889.1	PF02861.15	Clp_N	24	55	0.0019
Glyur000177s00010889.1	PF02861.15	Clp_N	140	175	1.1

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.134
SRR1783600	control	1.138
SRR1783602	moderate drought stress	2.089
SRR1811619	moderate drought stress	2.073

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.473
DRR006520	Root Summer glycyrrhizin high producing strain	3.423
DRR006521	Root Winter glycyrrhizin high producing strain	0.069
DRR006522	Root Winter glycyrrhizin high producing strain	0.101
DRR006523	Root Summer glycyrrhizin low producing strain	0.858
DRR006524	Root Summer glycyrrhizin low producing strain	0.860
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.474
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.492

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.310
SRR2868004	Drought Stress (root)	5.086
SRR2967015	Control (root)	6.475

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.185
SRR9715740	Leaf	0.370
SRR9715741	Leaf	0.620
SRR9715739	Root	0.046
SRR9715742	Root	0.966
SRR9715743	Root	0.476

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.044
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.038
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.018

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.398
SRR8400027	Control - Root	2.342