Gene detail information of Glyur000176s00012128 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15640.1 | 7.00E-142 | Mitochondrial substrate carrier family protein |
| NR | XP_003552598.1 | 0 | PREDICTED: solute carrier family 25 member 44-like [Glycine max] |
| Swissprot | tr|F4HT41|SAMC2_ARATH | 3.00E-25 | Probable S-adenosylmethionine carrier 2, chloroplastic (Precursor) |
| trEMBL | tr|I1N4P3|I1N4P3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G50740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00176 | 242535 | 247093 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000176s00012128.1 | PF00153.22 | Mito_carr | 29 | 100 | 5.50E-14 |
| Glyur000176s00012128.1 | PF00153.22 | Mito_carr | 118 | 206 | 3.20E-19 |
| Glyur000176s00012128.1 | PF00153.22 | Mito_carr | 226 | 313 | 1.40E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.133 |
| SRR1783600 | control | 2.224 |
| SRR1783602 | moderate drought stress | 3.031 |
| SRR1811619 | moderate drought stress | 3.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.284 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.507 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.602 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.708 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.119 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.432 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.343 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.269 |
| SRR2868004 | Drought Stress (root) | 26.882 |
| SRR2967015 | Control (root) | 16.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.897 |
| SRR9715740 | Leaf | 33.528 |
| SRR9715741 | Leaf | 65.297 |
| SRR9715739 | Root | 12.805 |
| SRR9715742 | Root | 24.707 |
| SRR9715743 | Root | 19.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.765 |
| SRR8749028 | MeJA induced 9h | 28.594 |
| SRR8749029 | MeJA induced 9h | 37.282 |
| SRR8749030 | Uninduced | 40.132 |
| SRR8749031 | Uninduced | 38.096 |
| SRR8749032 | Uninduced | 23.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.419 |
| SRR8400027 | Control - Root | 18.881 |