Gene detail

Gene detail information of Glyur000176s00012127

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G60920.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
NR	XP_003552600.1	PREDICTED: protein COBRA-like [Glycine max]
Swissprot	tr\|Q94KT8\|COBRA_ARATH	Protein COBRA (Precursor)
trEMBL	tr\|I1N4P5\|I1N4P5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G50760.1}

Sequence

Transcript Sequence

>Glyur000176s00012127.1
ATGAGAAAATTAGGACTGGTTCTTATATTCCTTTCTTTAAGTGAGGAGCCAACTGGAGCACAAACACAAGCAAGACAGTCAGTTTCCGCCGCTTATTTTTTCCACACACACTCTCTCTCTCTATCTTTTCCTCATTTTCTCTCTCTTATTTTTCTTTGCTTCCAGTCTTCTCTTGCACAGATCTTGAATCTTGAGCTATTCAGGCTAGAACACAGAAAGCACCAGAATTCCCGCATAGATTTTGCAGCTATAGAAATGGGCTTCTCCTTGTTATCAACAGCAANTCCTTGCATTCTGTTCCTGTTTCTACTCTCCTGCACTTGCTTCACTTCCACAGATGCTTATGATCCACTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGCTGGACACCTGATGGCTATGTTGCTGTTGTTACGATGAACAACTTCCAACAATATCGTCATATCGCTGCACCCGGCTGGTCACTAGGATGGACATGGGCAAAAAAGGAGGTAATCTGGACCATGATGGGAGGGCAGACCACTGAACAAGGGGATTGTTCAAAGTTTAAGGGAAATGCTCCGCATTGCTGTAAAAAGGATCCAACTGTTGTAGATTTACTTCCCGGAACACCTTACAATCAGCAGATTGCAAATTGCTGCAAAGGTGGTGTGCTCAGCTCATGGGCGCAGGACCCTACCAATGCAGTTGCATCATTTCAAGTCAGCGTCGGTAGAGCTGGAACCACGAACAAAACCGTTAAAGTCCCAAAGAACTTCACCTTGAAAGCACCAGGACCAGGTTATACTTGTGGGCCAGCAAAAATTGTGAGACCCACTCAATTTATTCAACCAGACAAAAGGAGAGTGACCCAAGCACTCATGACATGGAATGTGACATGCACATATTCACAATTTCTAGCTCAAAAAACTCCCACTTGCTGTGTCTCCCTATCATCTTTCTATAATGATACCATTGTACCCTGCCCAACATGTGCGTGTGGCTGCCAGAGTAACTCATCTCGGTCAGGGAGTTGTGTAGATGCAGATACGCCACATTTGGCATCGGTTGTTTCTGGTTCGGGAAAGAATAATCCTGCACCTTTGGTTCAATGTACTAGTCATATGTGCCCAGTCCGAATCCACTGGCATGTTAAGCTTAACTATAAGGAATACTGGCGTGTAAAGGTCACCATTAATAATTTTAATTACCGTATGAATTATTCTGAATGGAACTTGGTTGTTCAGCACCCGAACTTCGACAATCTGACTCAGCTGTTCAGTTTCAACTACAAGTCATTAACTCCTTATGGTTCAATAAATGATACAGCAATGCTTTGGGGAGTCAAGTTCTATAATGATTATCTCAATACAGCTGGTCCTAATGGTAACGTTCAATCGGAGCTACTCTTCCGAAAGGATAAATCAACTTTTACTTTCGATAAGGGTTGGGCTTTCCCTCGGAGGATCTACTTCAATGGTGACAACTGTGTCATGCCACCACCTGATGCTTATCCATGGTTACCTAATGCCGGTTCTAGGAAAGAGGTTTCTTTATTTGGTCTAGTGATGGCCTCTTTGGTAGCCTTGGTGTTTCATGCATACGCTTAAGGTTCCAACCTTTGGTTACATTACACTCAGCCTTGTAATAGAAAATTCTCAGTCAGAGCAGTTTTGACTACTCATATTTGTGGTGTCAATTTGGTTTCTGAAGCAAGTGAGAGGATGACATCCTGGTGGCAATTCAAGATTAGGTCATGTATCACATGGTTTGTGAAAAGGATTTCAGCGTATTGGTGGTAGAATTTGCTACTGTTTTGTTATTTGTGTCTGTTGCAATGCAGTGATATATGTATTCTTATCGTAACTGTAATTATAATAAATGTATACAGCAACATCACATGAACATATATACTTGATGAAGTGGATTTGAAATGAAATGCTAATGGTCTTTCTACTCACAGCTTCCTACTTGGAATCAAAATATTTTTTGTATCATGCTTAATATTGTATTGGAGAGAAGTATTCATTACAACATTGCAATACAAGTATTCACATAATTCAAACAACCCTGTTAGTGCTCATGAATCACAACACACATTCATGAGTCTGGCTCGGTGTTCTCAAAGAAGAATGCCTTAAAGAGTCTTCATACCTGTTATTGTCACATTTTCCGAGAGTAACAATACTTGGCTTCAAAATTTCACATAACAATCCCAGCTCGCTTATGTACCAATTCACCAAACAGCTAGCAAGACAAGCAATGAGAAAATGAATGTTGGAAAGTGAAGCACTTTTACAGGGGCAGAATTTGGGAGGAATGGGTANGTATCAGGTGGTGGCATCATGCATTCTTCACCATTGAAGTAAACCTTACGAGGAAATGCCCACCCTTGCTTGAATGTGAATGTATCCTTGTCCTTTTGAAGAAGCACTTCTGATTGAACATTCCCACTTGGTCCAGCTTCCATCAAGAGATCATTGAAGAATTTCATGCCATAGAACATAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00176	234397	238555	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0010215 cellulose microfibril organization

GO:0016049 cell growth

cellular_component
GO:0031225 anchored component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000176s00012127.1	PF04833.10	COBRA	138	302	1.50E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.176
SRR1783600	control	47.825
SRR1783602	moderate drought stress	46.197
SRR1811619	moderate drought stress	45.887

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.612
DRR006520	Root Summer glycyrrhizin high producing strain	24.858
DRR006521	Root Winter glycyrrhizin high producing strain	6.677
DRR006522	Root Winter glycyrrhizin high producing strain	6.524
DRR006523	Root Summer glycyrrhizin low producing strain	30.659
DRR006524	Root Summer glycyrrhizin low producing strain	30.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.794
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.071

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	98.585
SRR2868004	Drought Stress (root)	85.951
SRR2967015	Control (root)	57.560

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.250
SRR9715740	Leaf	53.090
SRR9715741	Leaf	51.475
SRR9715739	Root	20.830
SRR9715742	Root	30.292
SRR9715743	Root	29.802

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.921
SRR8749028	MeJA induced 9h	36.673
SRR8749029	MeJA induced 9h	21.667
SRR8749030	Uninduced	17.046
SRR8749031	Uninduced	10.000
SRR8749032	Uninduced	4.269

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	65.510
SRR8400027	Control - Root	70.106