Gene detail

Gene detail information of Glyur000176s00012126

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G15630.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
NR	KHN37931.1	COBRA-like protein 4 [Glycine soja]
Swissprot	tr\|Q9LFW3\|COBL4_ARATH	COBRA-like protein 4 (Precursor)
trEMBL	tr\|I1KWH8\|I1KWH8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G27570.1}

Sequence

Transcript Sequence

>Glyur000176s00012126.1
TGAAGATACTCCAACTCACTGAAAGAAAAGGTTTCTAACTCTTAGTGCAAAATATCATAATTGATAACATCAAAGGCACAATATTCAGGGAATGAGGCTTCTCATATCAGCTCTCTCTGTCATTGTGCTATGTTCTTATGCAGCTGCGTATGATCCTTTGGATCCCAATGGAAACATAACAATCAAATGGGATATTGTGTCTTGGACACCAGATGGCTATGTGGCAGTGGTAACAATGACCAATTTCCAAATGTACCGGCACATCATGAATCCAGGATGGACCTTGGGATGGTCATGGCCTAAGAAAGAAGTTATATGGTCCATGGTAGGATCTCAAACCACTGAGCAAGGAGACTGCTCTAAGTTCAAAGGCAATGTGCCTCACTGCTGCAAGAAAACTCCCACTGTTGTAGACTTGCTCCCTGGTGTACCTTACAACCAGCAATTCTCAAACTGCTGCAAAGGTGGAGTGGTTGCAGCATGGGGACAAGACCCTTCAGCAGCTGTCTCATCCTTCCAAGTGAGTGTTGGCCAAGCTGGTACTTCAAACAAGACAGTGAAACTCCCCAAAAACTTCACTCTCTTGGCTCCAGGACCAGGCTATACTTGTGGCCCTGCCAAGGTTGTTCCTTCCACCACTTTCCTTACACCAGACAAGCGCCGCAAGACTCAAGCACTCATGACATGGAATGTTACCTGCACATACTCACAATTTCTGGCAAGGAAGAACCCAAGTTGCTGTGTGTCTTTGTCATCTTTCTACAATGAGACCATTACCCCTTGCCCTTCTTGTGCCTGTGGCTGCCATAACAAGAAGAATTGTGTCAAGAGTAGCTCCAAATTTCTCAACATGGTGGGGATTCACACTCCAAAGAAAGACAATGAACCATTGCTACAGTGCACTCATCACATGTGCCCTATCAGGGTACACTGGCATGTGAAGCAGAACTATAAGGACTACTGGCGAGTCAAGATCGCGGTAACGAATTTCAACTACAGGTTGAATTACTCTCTCTGGACTCTTGCTGTACAACATCCAAATCTCAACAACATCACCCAAGTTTTCAGCTTTGATTACAAGCCTGTGCTTCCCTATGAGTCCATAAATGACACTGGTATGTTCTATGGCATGAAATTCTTCAATGATCTCTTGATGGAAGCTGGACCAAGTGGGAATGTTCAATCAGAAGTGCTTCTTCAAAAGGACAAGGATACATTCACATTCAAGCAAGGGTGGGCATTTCCTCGTAAGGTTTACTTCAATGGTGAAGAATGCATGATGCCACCACCTGATACNTACCCATTCCTCCCAAATTCTGCCCCTGTAAAAGTGCTTCACTTTCCAACATTCATTTTCTCATTGCTTGTCTTGCTAGCTGTTTGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00176	232633	234668	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0010215 cellulose microfibril organization

GO:0016049 cell growth

cellular_component
GO:0031225 anchored component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000176s00012126.1	PF04833.10	COBRA	43	207	6.20E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.531
SRR1783600	control	14.534
SRR1783602	moderate drought stress	6.289
SRR1811619	moderate drought stress	6.347

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.079
DRR006520	Root Summer glycyrrhizin high producing strain	26.846
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	16.830
DRR006524	Root Summer glycyrrhizin low producing strain	16.959
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.535
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.608

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.789
SRR2868004	Drought Stress (root)	8.256
SRR2967015	Control (root)	9.636

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.938
SRR9715740	Leaf	6.959
SRR9715741	Leaf	4.605
SRR9715739	Root	1.794
SRR9715742	Root	13.201
SRR9715743	Root	8.958

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.167
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.170
SRR8749030	Uninduced	0.028
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.023

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.469
SRR8400027	Control - Root	13.883