Gene detail

Gene detail information of Glyur000176s00012125

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02320.1	0	N2,N2-dimethylguanosine tRNA methyltransferase
NR	XP_006603927.1	0	PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 1-like isoform X2 [Glycine max]
COG	YP_004289558.1	1.00E-54	N(2),N(2)-dimethylguanosine tRNA methyltransferase [Methanobacterium sp. AL-21]
Swissprot	tr\|Q9SRU7\|TRM2_ARATH	0	Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2
trEMBL	tr\|K7MWB6\|K7MWB6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G04230.2}

Sequence

Transcript Sequence

>Glyur000176s00012125.1
TGATTTTCTCAAAAGTAGGATTCGTGGGGCAGAATAGAAATTGAAATTACTGCTCAATATATAAACAATGCCAGTTACTGTTTCGTGCTGCTGAGAAGTTGTAGATAGAGAGAGTTTGCAATCGTGTTCTTCAATGGCAATGGACCTCAATGATTACAAAATCATAAAGGAGGGTGAAGCTGAGATTCTCATGCACACCAAGAATGAAGTGTTCTTTAACAAAGCCCAGGTTAATAACAGGGATATGTCAATTGCTGTATTGAGGGAATTTATTTCAAAACGTAAGCAAGAGCATGAAACAATGTTGTCCAAGAGAACAAAGGCAGCACAAAAAGCATCAGAAAGTGGTTTTTCTGAACCTCTTGTTGAGGATGGAACTTGTTCATCTCCACCTGAGGATCATAGACCTAATAAGGAATGTGAGGCAGAGGAAGATATATCTCCTGAAGAACTGCGCAACACAACAGAAGAACCAAACAAGACCACTGAAGAATGCAATGCCGCAGGAGAGTCAATCAATATTTCTGAAGGAAAAGTTCGGCGGGAACTGAAGCCGCCGAGAGTTCTTGAGGCTCTGTCTGCTTCTGGGTTAAGGGCTCTCAGGTATGCTCGAGAAGTAGAAGGGATTGGGCATGTTGTTGCTCTGGACAATGATAAAGCTTCTGTGGAGGCTTGCAGAAGGAACATCAAATTCAACGGTTCGGTAGCATGTTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATATATGTTAACCCACCCCAAAGAATTTGATGTGGTTGATCTTGATCCTTATGGTTCACCTTCTGTGTTTCTGGATTCAGCAGTTCAATCTGTTGTTGATGGAGGTATGCTGATGTGCACTGCGACAGATATGGCGGTGCTCTGTGGGGGAAATGGGGAGGTTTGCTATTCAAAATACGGATCTTACCCACTGAGAGGAAAATATTGCCATGAAATGGCTTTAAGAATCCTTCTGGCTTCCATTGAGAGTCATGCTAATCGGTACAAACGATATATTGTTCCAGTGCTATCTGTTCAGATGGACTTTTATGTTCGTGTTTTTGTTCGTATATACACGTCAGCAAGTGCAATGAAAAACACTCCCCTGAAGCTTTCATATGTTTATCAGTGCACTGGTTGTGATTCTTTTCACCTACAGCCTATTGGGAGGACCATTTCCAAGAATAATAGCATCAGATATCTGCCTGGCTATGGTCCTGTTGTTCCTCAAGAATGCAGTTATTGTGGGAAGAAATTCAATATGGGTGGGCCTATATGGTCTGCTCCAATCCATGACCAAGAATGGGTGACTTCTATACTTGCAGACGTGAAATCTATGACGAACAATTATCCTGCTTATGATCGCATATCGGCTGTGTTGACTACAATTTCAGAGGAGTTGCCACATGTTCCCTTGTTTCTGAGTCTTCACAATCTGTGTTCAACACTTAAATGCACTTCTCCATCTGCAGTTATTTTCCGTTCTGCCGTGATCAATGCAGGCTATCATATATCTGGAACTCATGTTAATCCATTGGGACTGAAATCAGATGCTCCCATGGATGTTATTTGGGATATAATGCGCTGCTGGGTCAAGAATCATCCTGTGAAAGCTCAACCAGCAGATCAACCAGGAAGTGTCATACTTGCAAAGGAACCTGTTCTCCAGGCTAATTTTGCACGAGCTGTAGCATCTCTTAGCAAGGCACAAGCTAAGAAGGTTGCACGCTTTCTTCCAAATCCGGAAAGGCATTGGGGTCCTAAACTCAGGGCAGGGCGTCAAATTACTAGCAAGCATGTCTCTCTTTTGGGTGAAGCAGCAATTAATGGAGCTCTCAATCAGGAAGACACAAATGAGGAATCTAAAAGTAAGAAGCAGAAGACACAAGATAATGTCACAGCTTAGCTTAGCACCCAAATGAGGTTCTTTCATTAAACTTATTTATCAATCTTTGAGGTCTTGGAACTTCTATATCTTGATTACCAAAGAAATCCCATTTGTTGTCACTATATATTTTGTAAATAGTAGAGTGAAGACTGAGCTTAGTGAGAGAGGTTAGATAGTGAAACCTTGTTCCTTATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00176	224224	230164	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008033 tRNA processing

molecular_function

GO:0003723 RNA binding

GO:0004809 tRNA (guanine-N2-)-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000176s00012125.1	PF02005.11	TRM	12	486	2.50E-116

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.657
SRR1783600	control	2.657
SRR1783602	moderate drought stress	1.982
SRR1811619	moderate drought stress	2.042

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.626
DRR006520	Root Summer glycyrrhizin high producing strain	5.405
DRR006521	Root Winter glycyrrhizin high producing strain	3.977
DRR006522	Root Winter glycyrrhizin high producing strain	4.159
DRR006523	Root Summer glycyrrhizin low producing strain	4.017
DRR006524	Root Summer glycyrrhizin low producing strain	4.004
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.328
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.281

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.353
SRR2868004	Drought Stress (root)	5.759
SRR2967015	Control (root)	6.949

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.821
SRR9715740	Leaf	3.332
SRR9715741	Leaf	4.252
SRR9715739	Root	0.495
SRR9715742	Root	1.791
SRR9715743	Root	1.477

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.712
SRR8749028	MeJA induced 9h	1.039
SRR8749029	MeJA induced 9h	0.581
SRR8749030	Uninduced	0.766
SRR8749031	Uninduced	0.587
SRR8749032	Uninduced	0.463

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.610
SRR8400027	Control - Root	5.496