Gene detail

Gene detail information of Glyur000176s00012124

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15650.1	0	reversibly glycosylated polypeptide 2
NR	XP_003552602.1	0	PREDICTED: UDP-arabinopyranose mutase 1-like [Glycine max]
COG	YP_006541505.1	2.00E-17	Alpha-1,4-glucan-protein synthase, UDP-forming [Natrinema sp. J7-2]
Swissprot	tr\|Q8H8T0\|RGP1_ORYSJ	0	UDP-arabinopyranose mutase 1
trEMBL	tr\|I1N4P7\|I1N4P7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G50780.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000176s00012124.1
TATTATTCTGTGAATGTGAATGGCCAATATTTCTGATGTGTGTTTAGTGTGTTCACCTCAATGTAAGGCAACACAACATGGAAACCACCAAAGTTTAGAGAGTTGAAGGAGTCATGTTACCTTGAACATTCAGACACGTCTCAGTGCAAACCCCCTCACTCGTGCCGGAAACATCGGGCTCACACGTGCCACCCATTTATATCCCAATTCCTACATATAAGCTCCTTCTCCCTCTCTCCCTCTTCATCCATCTTTCAAAACACACACAGAGAGACACACACATACACTTTCTGTGATCTGTGAAACTTAACAACCATGGCAACACCATTGTTGAAGGACGAGTTAGACATCGTGATCCCCACGATAAGGAACCTGGACTTCTTAGAGATGTGGAGGCCATTCTTCCAGCCATACCANCTCATCATAGTGCAGGATGGTGACCCTTCAAAGACCATAAAGGTCCCTGAAGGTTTCGACTATGAGCTCTACAACCGCAATGACATCAACAGGATTCTGGGTCCTAAGGCCAATTGCATCTCCTTCAAGGACTCTGCATGCCGCTGCTTTGGCTACATGGTCTCTAAGAAGAAGTACATCTTCACCATTGATGATGACTGCTTCGTTGCATCTGATCCATCCGGGAAAAAGGTGAATGCACTTGAGCAGCATATAAAAAACCTTCTCTGCCCATCCACACCCTTATTTTTCAATACCCTCTATGAGCCTTTCAGAGAAGGTGCAGATTTTGTTCGTGGCTACCCCTTCAGTCTCCGTGAAGGTGTACCAACNGCAGTTTCTCACGGTCTCTGGCTCAACATCCCAGACTATGATGCTCCTACTCAGCTTGTGAAGCCTCTTGAGAGGAACACTAGGTATGTGGATGCNGTTCTCACCATACCAAAAGGCACTTTATTCCCCATGTGTGGAATGAACTTGGCATTCGATCGCGATCTCATCGGACCAGCAATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGACGCTACGACGACATGTGGGCTGGCTGGTGCTGCAAGGTAATCTGTGATCACTTGGGATTGGGAATCAAGACTGGTCTTCCCTACATCTATCATAGCAAGGCCAGTAACCCATTTGTGAACCTGAGGAAAGAGTACAAGGGTATCTTCTGGCAAGAAGACATTATCCCATTCTTCCAGAACGTTGTTCTCCCAAAAGAAGCTACCACTGTCCAGAAGTGCTACATTGAGCTTGCCAAGCAAGTCAAGGAAAAGCTTAACAATATAGATCCTTATTTTGACAAGTTGGCAGATGCCATGGTCACCTGGATTGAAGCTTGGGATGAGCTTAACACTGCTGGAGCATCACAGGCCAATGGCAAAGCATAGATCAATTTTGGTTAATCGCAAACAGCCACGGAACTTGAAGCGTAAAACTATTTATTTTACTCTTTAATATTTTTTTTAGCATTTGTTTTCAACTTACTGTTATTCACGGCTTAGAATTTGCAGCATTGTTAGCTGTAATTCCATTTAGTAATTTCATGCTTTGAGCTTTAGAAGGAATAAAGTTACAACCGTCTTAGGGCGTTGCTTTCTTTTGATTTTTGTTTCACGTGAAAAAAGTCTTATAGGAAGGCTATTATTGATGTATGTCTAGTTTATTACTGAGTACAGGTCCACAGTGATCAAATTTTAAATTGATTTGTTCAAAAGTTTAGATTTTTTCTTTGGCAGTTTTTCTGCCATTTGAATCATTGTTTTACCATTAGATGCTAGTTATCTATGAAGGCNTTTGTCTGTTACTGTTATGCTATATAAATACAAAGTCTCTCTACAGAAGGATGATAAACATAAATTCAGTTGAATGAAGAATTACAATTAGTTACAAGAACTGCAGGAAAATTGAATGTAGAAGTCCCTTAAACAAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00176	219913	222907	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT75

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13379	RGP, UTM	EC:2.4.1.- 5.4.99.30	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

molecular_function
GO:0016866 intramolecular transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000176s00012124.1	PF03214.8	RGP	1	342	2.50E-173

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	58.705
SRR1783600	control	58.548
SRR1783602	moderate drought stress	17.097
SRR1811619	moderate drought stress	16.844

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.425
DRR006520	Root Summer glycyrrhizin high producing strain	43.983
DRR006521	Root Winter glycyrrhizin high producing strain	100.972
DRR006522	Root Winter glycyrrhizin high producing strain	98.734
DRR006523	Root Summer glycyrrhizin low producing strain	46.147
DRR006524	Root Summer glycyrrhizin low producing strain	45.276
DRR006525	Leaf Summer glycyrrhizin high producing strain	155.438
DRR006526	Leaf Summer glycyrrhizin high producing strain	154.555

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	74.005
SRR2868004	Drought Stress (root)	30.492
SRR2967015	Control (root)	34.301

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	220.853
SRR9715740	Leaf	225.358
SRR9715741	Leaf	273.288
SRR9715739	Root	26.647
SRR9715742	Root	35.299
SRR9715743	Root	28.137

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	143.436
SRR8749028	MeJA induced 9h	100.491
SRR8749029	MeJA induced 9h	85.788
SRR8749030	Uninduced	35.285
SRR8749031	Uninduced	9.512
SRR8749032	Uninduced	18.082

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.488
SRR8400027	Control - Root	43.136