Gene detail information of Glyur000176s00012119 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29970.1 | 6.00E-22 | B12D protein |
| NR | XP_007139429.1 | 4.83E-35 | hypothetical protein PHAVU_008G028700g [Phaseolus vulgaris] |
| trEMBL | tr|V7B3H1|V7B3H1_PHAVU | 2.00E-35 | Uncharacterized protein {ECO:0000313|EMBL:ESW11423.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00176 | 193398 | 194710 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000176s00012119.1 | PF06522.6 | B12D | 23 | 67 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.051 |
| SRR1783600 | control | 0.050 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 87.451 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 84.341 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.155 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.293 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.013 |
| SRR2868004 | Drought Stress (root) | 2.834 |
| SRR2967015 | Control (root) | 0.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.167 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.411 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 202.224 |
| SRR8749028 | MeJA induced 9h | 1015.487 |
| SRR8749029 | MeJA induced 9h | 481.511 |
| SRR8749030 | Uninduced | 1162.463 |
| SRR8749031 | Uninduced | 1322.572 |
| SRR8749032 | Uninduced | 506.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.387 |
| SRR8400027 | Control - Root | 5.198 |