Gene detail information of Glyur000176s00012116 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24530.1 | 3.00E-21 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | XP_004491898.1 | 2.99E-90 | PREDICTED: hyoscyamine 6-dioxygenase-like [Cicer arietinum] |
| COG | YP_003209425.1 | 3.00E-07 | hypothetical protein CTU_10620 [Cronobacter turicensis z3032] |
| Swissprot | tr|P24397|HY6H_HYONI | 2.00E-24 | Hyoscyamine 6-dioxygenase |
| trEMBL | tr|I3S6T8|I3S6T8_LOTJA | 1.00E-90 | Uncharacterized protein {ECO:0000313|EMBL:AFK35980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00176 | 177811 | 180645 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000176s00012116.1 | PF14226.1 | DIOX_N | 39 | 145 | 9.80E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.617 |
| SRR1783600 | control | 4.722 |
| SRR1783602 | moderate drought stress | 6.377 |
| SRR1811619 | moderate drought stress | 6.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 49.632 |
| SRR2868004 | Drought Stress (root) | 103.173 |
| SRR2967015 | Control (root) | 80.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 2.106 |
| SRR9715742 | Root | 1.545 |
| SRR9715743 | Root | 1.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.438 |
| SRR8749028 | MeJA induced 9h | 2.813 |
| SRR8749029 | MeJA induced 9h | 2.516 |
| SRR8749030 | Uninduced | 1.554 |
| SRR8749031 | Uninduced | 8.889 |
| SRR8749032 | Uninduced | 6.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.853 |
| SRR8400027 | Control - Root | 14.359 |