Gene detail information of Glyur000176s00012111 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G69120.1 | 1.00E-43 | K-box region and MADS-box transcription factor family protein |
| NR | XP_003621521.1 | 4.47E-101 | MADS-box protein [Medicago truncatula] |
| Swissprot | tr|Q39371|3AP1_BRAOL | 1.00E-53 | Floral homeotic protein APETALA 1 |
| trEMBL | tr|G7KR16|G7KR16_MEDTR | 2.00E-101 | MADS-box transcription factor {ECO:0000313|EMBL:AES77739.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00176 | 130808 | 139859 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | M-type |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000176s00012111.1 | PF00319.13 | SRF-TF | 9 | 59 | 3.40E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.843 |
| SRR1783600 | control | 0.823 |
| SRR1783602 | moderate drought stress | 1.041 |
| SRR1811619 | moderate drought stress | 0.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.138 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.264 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.233 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.637 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.025 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.579 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.085 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.932 |
| SRR2868004 | Drought Stress (root) | 3.025 |
| SRR2967015 | Control (root) | 3.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.010 |
| SRR9715740 | Leaf | 0.326 |
| SRR9715741 | Leaf | 0.105 |
| SRR9715739 | Root | 0.937 |
| SRR9715742 | Root | 0.978 |
| SRR9715743 | Root | 1.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.137 |
| SRR8749028 | MeJA induced 9h | 1.594 |
| SRR8749029 | MeJA induced 9h | 0.886 |
| SRR8749030 | Uninduced | 0.395 |
| SRR8749031 | Uninduced | 0.277 |
| SRR8749032 | Uninduced | 0.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.428 |
| SRR8400027 | Control - Root | 0.210 |