Gene detail information of Glyur000176s00012110 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02300.1 | 0 | Regulator of chromosome condensation (RCC1) family protein |
| NR | XP_003552611.1 | 0 | PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like isoform X1 [Glycine max] |
| COG | YP_629150.1 | 2.00E-37 | RCC1 repeat-containing protein [Myxococcus xanthus DK 1622] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 2.00E-35 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|K7MV24|K7MV24_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G50920.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00176 | 125075 | 130075 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000176s00012110.1 | PF00415.13 | RCC1 | 21 | 75 | 7.60E-05 |
| Glyur000176s00012110.1 | PF00415.13 | RCC1 | 78 | 127 | 1.80E-15 |
| Glyur000176s00012110.1 | PF00415.13 | RCC1 | 184 | 241 | 1.40E-07 |
| Glyur000176s00012110.1 | PF00415.13 | RCC1 | 244 | 296 | 2.00E-14 |
| Glyur000176s00012110.1 | PF00415.13 | RCC1 | 299 | 357 | 1.70E-09 |
| Glyur000176s00012110.1 | PF00415.13 | RCC1 | 361 | 409 | 3.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.796 |
| SRR1783600 | control | 4.673 |
| SRR1783602 | moderate drought stress | 5.098 |
| SRR1811619 | moderate drought stress | 5.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.665 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.279 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.115 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.101 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.029 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.177 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.883 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.647 |
| SRR2868004 | Drought Stress (root) | 16.704 |
| SRR2967015 | Control (root) | 15.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.252 |
| SRR9715740 | Leaf | 26.075 |
| SRR9715741 | Leaf | 29.516 |
| SRR9715739 | Root | 3.286 |
| SRR9715742 | Root | 8.150 |
| SRR9715743 | Root | 6.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.708 |
| SRR8749028 | MeJA induced 9h | 5.085 |
| SRR8749029 | MeJA induced 9h | 4.138 |
| SRR8749030 | Uninduced | 1.640 |
| SRR8749031 | Uninduced | 1.958 |
| SRR8749032 | Uninduced | 1.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.612 |
| SRR8400027 | Control - Root | 15.237 |