Gene detail

Gene detail information of Glyur000176s00012107

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38900.1	7.00E-83	Thioredoxin superfamily protein
NR	AES77743.2	7.61E-147	DSBA oxidoreductase family protein [Medicago truncatula]
COG	YP_003795727.1	2.00E-48	putative thiol oxidoreductase [Candidatus Nitrospira defluvii]
trEMBL	tr\|G7KR19\|G7KR19_MEDTR	3.00E-147	DSBA oxidoreductase family protein {ECO:0000313\|EMBL:AES77743.2}

Sequence

Transcript Sequence

>Glyur000176s00012107.1
GTTATTTCTCTTTTCAGCTCTGTGATCAACATCAGACAACTCCAAATCTAATTCCCAGGCAAAGCTTCTGAAATCTGGTGCCTCTCCTCTCTCTTCACCCTTCCGGAGACATTGCAGATACAGTAGGATCATGACTGACACTAACAGTGCTCACTCTGAAAAGAAACTCGTACGAGTTGATATTAGTTCTGATACTGTGTGTCCATGGTGCTTTGTTGGCAAAAAGAATCTAGACAATGCCATAGCAGCCTCTAAGGATAAATACAACTTTGAGATAAAATGGCACCCTTATCAACTCAACCCTGATGCCCCTAAAGAAGGCATTGACAAGAGGGAGTTTTACAGAAGTAAGTTTGGATCACAATCAGAAAAGATGGAAGCTCGGATGTCAGAGGTCTTCAGGACTATTGGTCTGGAATATAGTTTGTCTGGACTCACGGGAAACACTATGGATAGCCACAGGCTTATATATTTTTCTGGACAGCAGGGTCTTGATAAGCAACATGATCTAGTTGAAGAACTTGGCCTTGGCTACTTCACACAGGGAAAATACATTGGTGACCAGAAGTTTCTTCTGGAAGCTGCTGCCAAGGTTGGTATAGAAGGGGCAGAAGAGTTCCTTAAGAACCCCAACAATGGGCTGAAGGAGGTCGAGGATGAGCTTAAAACATACTCAGGAAACATTACAGGGGTTCCATATTATGTGATTAATGGGAATCAGAAGCTGAGCGGTGCACAACCCACTGAGGTCTTCTTGAGAGCTTTCCAAGTTGCTACAAGTTGATTTTTCAGCTCCTCAAAAAAGTTTCTATTGTATTCAGTATTCCATCACAATGATACCTCAGAATTAAGAAGTTACCCGGATGCAATAATAATGAATTGAATGACTTTGCTATGTAATTTGCAACTTCTTTAAGTGCTTGCCTACATAAAAATAGCTTTTCAGCCAATAGTTGCAGCAGTTTTGACTATGAACTTTTATATGAATACAAAATACGAAATATGAATATGAATATGAATACTAAGTCCCTANGACTTGGTAGAAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00176	118447	121143	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000176s00012107.1	PF01323.15	DSBA	16	212	1.30E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.052
SRR1783600	control	4.055
SRR1783602	moderate drought stress	7.338
SRR1811619	moderate drought stress	7.334

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.727
DRR006520	Root Summer glycyrrhizin high producing strain	3.793
DRR006521	Root Winter glycyrrhizin high producing strain	8.566
DRR006522	Root Winter glycyrrhizin high producing strain	8.531
DRR006523	Root Summer glycyrrhizin low producing strain	23.901
DRR006524	Root Summer glycyrrhizin low producing strain	23.502
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.969
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.939

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.557
SRR2868004	Drought Stress (root)	53.308
SRR2967015	Control (root)	40.674

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.362
SRR9715740	Leaf	10.623
SRR9715741	Leaf	21.488
SRR9715739	Root	3.096
SRR9715742	Root	5.483
SRR9715743	Root	4.811

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.625
SRR8749028	MeJA induced 9h	21.877
SRR8749029	MeJA induced 9h	22.830
SRR8749030	Uninduced	62.524
SRR8749031	Uninduced	61.875
SRR8749032	Uninduced	36.867

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.568
SRR8400027	Control - Root	20.783