Gene detail information of Glyur000176s00012105


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G16720.12.00E-93Ribosomal protein L23/L15e family protein
NRXP_007157273.18.73E-142hypothetical protein PHAVU_002G057000g [Phaseolus vulgaris]
COGYP_004576948.13.00E-5550S ribosomal protein L15e [Methanothermococcus okinawensis IH1]
Swissprottr|O82528|RL15_PETHY2.00E-13360S ribosomal protein L15
trEMBLtr|V7CGG2|V7CGG2_PHAVU3.00E-142Ribosomal protein L15 {ECO:0000256|RuleBase:RU000663}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00176109570111451+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000176s00012105.1PF00827.12Ribosomal_L15e21939.40E-98


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control169.416
SRR1783600control169.737
SRR1783602moderate drought stress113.334
SRR1811619moderate drought stress112.496

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain324.647
DRR006520Root Summer glycyrrhizin high producing strain321.177
DRR006521Root Winter glycyrrhizin high producing strain294.937
DRR006522Root Winter glycyrrhizin high producing strain286.839
DRR006523Root Summer glycyrrhizin low producing strain201.982
DRR006524Root Summer glycyrrhizin low producing strain202.715
DRR006525Leaf Summer glycyrrhizin high producing strain69.725
DRR006526Leaf Summer glycyrrhizin high producing strain69.364

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)437.022
SRR2868004Drought Stress (root)262.818
SRR2967015Control (root)264.273

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf121.203
SRR9715740Leaf101.959
SRR9715741Leaf81.082
SRR9715739Root295.120
SRR9715742Root216.862
SRR9715743Root221.668

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h588.663
SRR8749028MeJA induced 9h228.122
SRR8749029MeJA induced 9h385.567
SRR8749030Uninduced50.268
SRR8749031Uninduced34.249
SRR8749032Uninduced71.096

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root283.960
SRR8400027Control - Root271.800

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved