Gene detail

Gene detail information of Glyur000176s00012091.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69010.1	6.00E-40	BES1-interacting Myc-like protein 2
NR	AFK40942.1	2.56E-169	unknown [Lotus japonicus]
Swissprot	tr\|Q9CAA4\|BIM2_ARATH	1.00E-46	Transcription factor BIM2
trEMBL	tr\|I3SL00\|I3SL00_LOTJA	1.00E-169	Uncharacterized protein {ECO:0000313\|EMBL:AFK40942.1}

Sequence

Transcript Sequence

>Glyur000176s00012091.1
CACAACACAATATTACTAAGCTCACTCGTTTGATTTTCCGATTACTTTTGCGGTTTGGATTTTCTCGAGAAAATTTTTGTTGCATCTTAAACTAAGGAAGGAGATGGCTAGGTCTGCCAACAGAGGCCATCAAGATGAAGAAGAATTGGTGGACGATGACGACCACGACCTCTTCATAACTCCAAACACCTCTTCCTCTCTCTCTCTCAACAACAACAACAACAACATTAACAACAACAACAAAGTTAACGTGGATGAGCCCAGCAGGGGGAAGAGGGTCAACCCTCATCGTTCCAAGCATTCTGAGACTGAGCAGCCCAGATTTCAGGTTCTGAGAGATCTCATACCTCAAAATGATCAAAAAAGAGATAAGGCCTCCTTCTTGTTGGAGGTTATTGAGTATATTCAGTTCCTACAGGAAAAATTACAAATTTATGAACAGTCTTATGAAGGATGGNATCAGGAGCCAACGAAATTAACTCCATGGAGAAATAATCATGGGCCTGCAGAAAATACTACAGATCCTTNTCGAGCCATTCAAAATGGGTCTGTTCATGAGAAAAATAATAATGTCTCTCCATTATTGCCCAAAAATGCTCATAACCCAATAGTGTCTGAATTCTCAACAACAANTATTCAGAAGGGTTGCACCCCAGGTTCAGCTACAGAAGCAGTTCCCCCGACCATGCAAATGCGAATGAACATGTTTGATCCAGTTGTTAGCAGTGGTATGGTAAACCAACATATGCTGGAGCCTGTACCTAATGCTGACATGCCTTCCCATACCCAGCCTCAAGTATGGCTTAGCAAACCAAATAAGGACAGTTATATTGTTCCAGATAATACATTGAAGGAACAGGAGGAGCTGACAATTGAAAGTGGATCAGATAGCATCTCAAATGCCTATTCTCAGAGAATATTAGGTAATCTCACCCATGCGCTGCAGTCTTCGGGTGTGGATCTATCCAAGACCAGTCTCTCAGTGCAAATTGATGTCGGGAGACGAACAAATACCGGGTTGATCCTCTCCGCATATAGCTCAAAGGGTCATGAAAACCAATTTGTGAGCAATCGAGCAATGACATGTTCAGGAGTTGATTACTGCAGTGAGGATTCTGGACGAAGTCCAAAGAGGCTCAGACCAGGAGCATGCTAGCGATCCCCTTCATGTTCCTTTTGTTATGTTTCATTTCTCTTTTCTTTTTCTTTTTTGTGTCTTCAGCTGAGGGAAAGCAGGGTTGGGTGGGGAAGACCATTTTTGTCTTGCTAGGTAGATCTAGATAACATGTATATTTCGTGATTCTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00176	34874	38291	-

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000176s00012091.1	PF00010.21	HLH	73	105	7.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.530
SRR1783600	control	14.698
SRR1783602	moderate drought stress	16.879
SRR1811619	moderate drought stress	16.838

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.968
DRR006520	Root Summer glycyrrhizin high producing strain	24.230
DRR006521	Root Winter glycyrrhizin high producing strain	18.865
DRR006522	Root Winter glycyrrhizin high producing strain	18.230
DRR006523	Root Summer glycyrrhizin low producing strain	23.127
DRR006524	Root Summer glycyrrhizin low producing strain	23.179
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.970
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.911

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.454
SRR2868004	Drought Stress (root)	21.343
SRR2967015	Control (root)	23.977

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.698
SRR9715740	Leaf	16.599
SRR9715741	Leaf	15.060
SRR9715739	Root	3.921
SRR9715742	Root	7.551
SRR9715743	Root	7.324

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.206
SRR8749028	MeJA induced 9h	8.111
SRR8749029	MeJA induced 9h	6.417
SRR8749030	Uninduced	11.318
SRR8749031	Uninduced	5.574
SRR8749032	Uninduced	4.467

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.364
SRR8400027	Control - Root	20.202