Gene detail information of Glyur000176s00012089 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G30300.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004491947.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 5.00E-34 | Uncharacterized protein At1g04910 |
| trEMBL | tr|I1KWL1|I1KWL1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G28020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00176 | 27106 | 33144 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000176s00012089.1 | PF10250.4 | O-FucT | 107 | 398 | 4.20E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.038 |
| SRR1783600 | control | 7.250 |
| SRR1783602 | moderate drought stress | 7.239 |
| SRR1811619 | moderate drought stress | 7.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.555 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.743 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.587 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.611 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.955 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.650 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.456 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.624 |
| SRR2868004 | Drought Stress (root) | 15.354 |
| SRR2967015 | Control (root) | 18.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.819 |
| SRR9715740 | Leaf | 7.122 |
| SRR9715741 | Leaf | 8.587 |
| SRR9715739 | Root | 3.889 |
| SRR9715742 | Root | 7.517 |
| SRR9715743 | Root | 7.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.448 |
| SRR8749028 | MeJA induced 9h | 4.037 |
| SRR8749029 | MeJA induced 9h | 1.747 |
| SRR8749030 | Uninduced | 0.557 |
| SRR8749031 | Uninduced | 0.067 |
| SRR8749032 | Uninduced | 0.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.703 |
| SRR8400027 | Control - Root | 16.212 |