Gene detail information of Glyur000175s00012078 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G63110.1 | 8.00E-145 | GPI transamidase subunit PIG-U |
| NR | KEH31711.1 | 0 | GPI transamidase subunit PIG-U [Medicago truncatula] |
| trEMBL | tr|A0A072UQS3|A0A072UQS3_MEDTR | 0 | GPI transamidase subunit PIG-U {ECO:0000313|EMBL:KEH31711.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00175 | 252634 | 258585 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000175s00012078.1 | PF06728.8 | PIG-U | 15 | 428 | 1.10E-100 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.885 |
| SRR1783600 | control | 15.755 |
| SRR1783602 | moderate drought stress | 22.990 |
| SRR1811619 | moderate drought stress | 22.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.935 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.953 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.120 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.907 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.005 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.849 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.847 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.133 |
| SRR2868004 | Drought Stress (root) | 24.428 |
| SRR2967015 | Control (root) | 28.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.197 |
| SRR9715740 | Leaf | 10.879 |
| SRR9715741 | Leaf | 8.285 |
| SRR9715739 | Root | 12.179 |
| SRR9715742 | Root | 13.495 |
| SRR9715743 | Root | 11.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.474 |
| SRR8749028 | MeJA induced 9h | 9.701 |
| SRR8749029 | MeJA induced 9h | 8.251 |
| SRR8749030 | Uninduced | 3.229 |
| SRR8749031 | Uninduced | 1.470 |
| SRR8749032 | Uninduced | 2.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.389 |
| SRR8400027 | Control - Root | 34.369 |