Gene detail information of Glyur000175s00012066.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12610.1 | 8.00E-33 | Integrase-type DNA-binding superfamily protein |
| NR | XP_004515794.1 | 4.76E-85 | PREDICTED: dehydration-responsive element-binding protein 1D-like [Cicer arietinum] |
| Swissprot | tr|Q9LN86|DRE1F_ARATH | 1.00E-54 | Dehydration-responsive element-binding protein 1F |
| trEMBL | tr|V7CF76|V7CF76_PHAVU | 1.00E-79 | Uncharacterized protein {ECO:0000313|EMBL:ESW27561.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00175 | 198281 | 198970 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000175s00012066.1 | PF00847.15 | AP2 | 40 | 91 | 4.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.651 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.646 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 36.269 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.056 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.380 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.261 |
| SRR2868004 | Drought Stress (root) | 1.073 |
| SRR2967015 | Control (root) | 1.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 410.178 |
| SRR9715740 | Leaf | 126.674 |
| SRR9715741 | Leaf | 314.138 |
| SRR9715739 | Root | 80.678 |
| SRR9715742 | Root | 138.971 |
| SRR9715743 | Root | 111.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.570 |
| SRR8749028 | MeJA induced 9h | 5.437 |
| SRR8749029 | MeJA induced 9h | 2.362 |
| SRR8749030 | Uninduced | 12.596 |
| SRR8749031 | Uninduced | 1.571 |
| SRR8749032 | Uninduced | 4.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.267 |
| SRR8400027 | Control - Root | 0.788 |