Gene detail

Gene detail information of Glyur000175s00012059

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G63000.1	2.00E-148	nucleotide-rhamnose synthase/epimerase-reductase
NR	XP_004515790.1	0	PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Cicer arietinum]
COG	YP_001938687.1	2.00E-39	dTDP-4-dehydrorhamnose reductase [Methylacidiphilum infernorum V4]
Swissprot	tr\|Q9LQ04\|RMLCD_ARATH	0	Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase {ECO:0000305}
trEMBL	tr\|I1MUS3\|I1MUS3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G14170.1}

Sequence

Transcript Sequence

>Glyur000175s00012059.1
CCTATTCCTCCGTGCTACATATATAGAAAAGAAGTGAAGCAGAGGAAGGCATCGAGTAACTCCCCCCTTTCAGAGAGGAGGAGAAGAGGCAGAGATCTAGCTACCATTTCCTTCGTTTTCTCTCTCGNTCTTCTCACTCTCACTCTTCTGTGCGTGTAAAAGAAAGGTATANCAACATGGGGTTCCCAGCAAACGGCGCCTCCGGGGAGAAGAAGCCCCTCAAGTTCCTGATATACGGTCGCACCGGATGGATTGGGGGCCTATTGGGTAGCCTGTGCAGAGCCCAGGGGATCGAGTTCGAATACGGGTCGGGTCGACTGGAGAACCGGTCCTCTCTGGAGAACGACATAGCGGAGGTGAAGCCCACACACGTGTTCAACGCTGCCGGTGTTACGGGCCGGCCCAACGTGGACTGGTGCGAGACCCACAAGGTGGAGACCATCCGAGCCAACGTGGTTGGCACCCTCACCCTTGCTGACGTGTGCCGCGAGCGCGGCCTCCTCCTCCTCAACTACGCCACCGGTTGCATCTTCGAGTACGACTCCGCTCACCCCCTCGGATCCGGCATCGGCTTCAAGGAAGATGACTCTCCCAATTTCATTGGCTCCTTCTACTCCAAGACCAAGGCCATGGTGGAAGATCTGCTCAGGAACTACGATAATGTGTGTACCTTGCGAGTGAGGATGCCTATTTCATCTGATTTATCCAACCCTCGCAATTTCATCACAAAGATCACTCGATACGAGAAGGTCGTCGACATTCCGAATTCGATGACCATATTGGATGAACTCCTTCCCATATCCATGGAGATGGCAAAGAGAAACCTCACTGGGATCTGGAACTTCACAAACCCCGGCGTTGTCAGCCACAATGAGATCTTAGAGATGTACAGAGACTATATTGATCCCAACTTCACCTGGAAGAACTTCACTCTTGAGGAACAGGCCAAGGTAATAGTTGCCCCGAGAAGCAACAATGAGCTCGACGCATCAAAATTGAAGAATGAATTTCCTGAGCTATTGTCTATCAAGGACTCACTCATTCAGTATGTCTTCAAGCCAAATCAGAAGGTTAAAGCTTGAGTAGTATGAATTAAGGTTCCCAGTTTTACCATTTAATATTGTTTCTCATTTGATTTCAGTTTGTGTGGATTGATGCTACGAAGATGTACCCTCTCCGTTCATATGATTCAGTGCCTGTATTTTTATTTATTATATGTTGTATTTGTATTGACTCCATGAATAAGTTAGTTGCAAGTTACTTATGAACAATGAAATTTTTGTATGCTTGATCTCTCTTATATGACTTTTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00175	157575	159455	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12451	UER1	EC:5.1.3.- 1.1.1.-	Amino sugar and nucleotide sugar metabolism	map00520
			Polyketide sugar unit biosynthesis	map00523

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000175s00012059.1	PF04321.12	RmlD_sub_bind	16	230	1.60E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	160.814
SRR1783600	control	161.734
SRR1783602	moderate drought stress	109.808
SRR1811619	moderate drought stress	109.212

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	113.301
DRR006520	Root Summer glycyrrhizin high producing strain	111.502
DRR006521	Root Winter glycyrrhizin high producing strain	13.237
DRR006522	Root Winter glycyrrhizin high producing strain	13.174
DRR006523	Root Summer glycyrrhizin low producing strain	86.127
DRR006524	Root Summer glycyrrhizin low producing strain	86.236
DRR006525	Leaf Summer glycyrrhizin high producing strain	89.100
DRR006526	Leaf Summer glycyrrhizin high producing strain	88.304

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	269.420
SRR2868004	Drought Stress (root)	220.070
SRR2967015	Control (root)	169.999

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	152.893
SRR9715740	Leaf	175.220
SRR9715741	Leaf	139.544
SRR9715739	Root	82.024
SRR9715742	Root	100.360
SRR9715743	Root	99.440

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.651
SRR8749028	MeJA induced 9h	50.765
SRR8749029	MeJA induced 9h	48.146
SRR8749030	Uninduced	21.298
SRR8749031	Uninduced	11.493
SRR8749032	Uninduced	13.022

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	173.052
SRR8400027	Control - Root	223.611