Gene detail information of Glyur000175s00012048 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22890.3 | 2.00E-109 | PGR5-LIKE A |
| NR | XP_003525746.1 | 0 | PREDICTED: PGR5-like protein 1A, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q8H112|PGL1A_ARATH | 5.00E-168 | PGR5-like protein 1A, chloroplastic (Precursor) |
| trEMBL | tr|I1K0F7|I1K0F7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G03730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00175 | 104970 | 113281 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.610 |
| SRR1783600 | control | 1.592 |
| SRR1783602 | moderate drought stress | 1.721 |
| SRR1811619 | moderate drought stress | 1.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.630 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.782 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.960 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.591 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.272 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.422 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 117.066 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 116.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.464 |
| SRR2868004 | Drought Stress (root) | 6.253 |
| SRR2967015 | Control (root) | 3.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 78.831 |
| SRR9715740 | Leaf | 103.790 |
| SRR9715741 | Leaf | 82.555 |
| SRR9715739 | Root | 0.967 |
| SRR9715742 | Root | 2.428 |
| SRR9715743 | Root | 1.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.646 |
| SRR8749028 | MeJA induced 9h | 8.862 |
| SRR8749029 | MeJA induced 9h | 8.472 |
| SRR8749030 | Uninduced | 6.169 |
| SRR8749031 | Uninduced | 4.469 |
| SRR8749032 | Uninduced | 6.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.755 |
| SRR8400027 | Control - Root | 4.828 |