Gene detail

Gene detail information of Glyur000175s00012039

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22680.1	5.00E-77	myb domain protein 85
NR	XP_003516672.1	3.36E-143	PREDICTED: protein ODORANT1 [Glycine max]
Swissprot	tr\|Q50EX6\|ODO1_PETHY	1.00E-108	Protein ODORANT1
trEMBL	tr\|A0A072UQP4\|A0A072UQP4_MEDTR	2.00E-139	Myb transcription factor {ECO:0000313\|EMBL:KEH31681.1}

Sequence

Transcript Sequence

>Glyur000175s00012039.1
ATGGGGAGACAACCTTGTTGTGACAAGTTTGGGGTGAAGAAAGGTCCATGGACAGCAGAGGAAGACAAGAAGCTCATAAACTTCATTCTCACCAATGGACAGTGTTGTTGGCGTGCTGTGCCAAAACTTGCTGGCCTCAGGCGCTGTGGCAAGAGTTGCAGACTTCGTTGGACTAATTATCTTAGGCCAGACTTAAAGAGAGGCCTCCTCACTGAAGCAGAGGAGCAGCTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTTCCAGGTTACCGGGGAGAACAGACAATGAGATTAAGAATCACTGGAACACCCATATCAAGAAAAAGCTCCTTAAGATGGGTATTGATCCAGTTACTCATGAACCTCTCAATAAACAAGAAGCTGCATCTTCATCCCCTGCANAGCATTTGCCACAACCCGCTGGCAATAATAACCATCAGGTGGTGATGAAGGAAACTNATGACAGGGTTCCCAACTCAGAGGAGAATTCAAGCTCATCCCCAGCAGCTGAAGCAGAAAACTCTTCTTCTGGAGAAGAATCATCATCCCTTTTGCTAGATAACATTTGTAGTGACGACTCTCTGATGAATAGCCTGTGGCTGGACGAAACTCCACTGGTAGAAGCACTTTGGGACACCAACAACAACAACACTACACCACCTATAATAGCTGCAGAGACAGAGAATAATACTAAAGTTGACATGGGCTTTGTGGTGCCATCTAATTGGGAGGATACCTGCGCTTGGCTATTGGACTGTCAGGACTTTGGTATTCATGATTTTGAGTTTAACTGTTTCAATGAGATAGAGTCAAATGCACTTCAAGCTATAGGGATGAAGGAAGAGAAGCATTAGCATGAAGGGGAATATTGATTGATTGTGTTCAAGTATACTATCAGGGTAAGTAAAANGTCAAATCTGTACATTGTGACAAAATACCATGGGCTCAAATTTAAGTTCTTGGTGTTGGAGTTTTATCTAGCTGTGCTAGTATTTTATACAGAATGTTTTTGGAAGGTGGAAGGTGAACCTTTCCTCTTATGAGGTTCCTAGTGAACCAAATCACAAAACTGATAGCAAACCATAAATCATGGAAATGCCACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00175	62262	64115	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000175s00012039.1	PF00249.26	Myb_DNA-binding	14	61	2.40E-13
Glyur000175s00012039.1	PF00249.26	Myb_DNA-binding	70	111	2.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.974
SRR1783600	control	2.063
SRR1783602	moderate drought stress	1.973
SRR1811619	moderate drought stress	1.970

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.769
DRR006520	Root Summer glycyrrhizin high producing strain	0.767
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.723
DRR006524	Root Summer glycyrrhizin low producing strain	1.741
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.662
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.822

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.138
SRR2868004	Drought Stress (root)	16.271
SRR2967015	Control (root)	11.862

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.624
SRR9715740	Leaf	1.433
SRR9715741	Leaf	0.293
SRR9715739	Root	1.444
SRR9715742	Root	2.831
SRR9715743	Root	2.926

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.127
SRR8749028	MeJA induced 9h	0.060
SRR8749029	MeJA induced 9h	0.057
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.071
SRR8400027	Control - Root	6.253