Gene detail information of Glyur000175s00012037 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12340.1 | 3.00E-25 | copper ion binding |
| NR | NP_001241521.1 | 1.12E-92 | uncharacterized protein LOC100819690 [Glycine max] |
| trEMBL | tr|C6SXN1|C6SXN1_SOYBN | 4.00E-93 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G03790.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00175 | 56460 | 58574 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 52.441 |
| SRR1783600 | control | 52.635 |
| SRR1783602 | moderate drought stress | 30.247 |
| SRR1811619 | moderate drought stress | 31.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.610 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.259 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 53.461 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 53.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.580 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.202 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.710 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 51.659 |
| SRR2868004 | Drought Stress (root) | 45.821 |
| SRR2967015 | Control (root) | 43.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.426 |
| SRR9715740 | Leaf | 35.738 |
| SRR9715741 | Leaf | 33.942 |
| SRR9715739 | Root | 17.203 |
| SRR9715742 | Root | 25.021 |
| SRR9715743 | Root | 25.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 129.996 |
| SRR8749028 | MeJA induced 9h | 89.340 |
| SRR8749029 | MeJA induced 9h | 126.556 |
| SRR8749030 | Uninduced | 79.461 |
| SRR8749031 | Uninduced | 53.786 |
| SRR8749032 | Uninduced | 76.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 43.974 |
| SRR8400027 | Control - Root | 39.292 |