Gene detail

Gene detail information of Glyur000175s00012026

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62850.3	5.00E-76	Class I peptide chain release factor
NR	XP_003525768.1	2.83E-122	PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial-like isoform X1 [Glycine max]
COG	YP_003817111.1	9.00E-22	class I peptide chain release factor [Brevundimonas subvibrioides ATCC 15264]
trEMBL	tr\|I1K0H7\|I1K0H7_SOYBN	1.00E-122	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G03930.1}

Sequence

Transcript Sequence

>Glyur000175s00012026.1
ATGTATGGTATGGCTACCGCCACCAGCACTAGGATGGTGAAGGAGATGTTGCACCTCTCTTCCACACTTTCCTTCTCTCTGCTTTCTCGCCCTTTCCCCTCCTTACCTTACGCTAATAGTGCTCTTCAATTACGGCGCTCACACCCTCCCACTGCAATTCGATGCGCTTCCTCCGATTCCGATGCTTCCGGGAACAAAGTATCGTCTCGGCTATCACAGGTCCAGCATCTCCTCCAACAAGCTGAACACCGAGCTCTCTCCGCCGACAACGGCCCTATTCCTAAAATNACCTTGGATCATGTTACTGTGAACTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGTGAATAAAGTGAACACCAAGGTCGACATGCGCTTCAACGTTAGAAATGCACATTGGCTAAGTGACAGGGTCAGGGAGAAGATTATGCAAACGGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACACAAAAGGGTAACATTGAGGATGCACTGGCAAAGCTTCAGGAAATCATTGACGCAGCATCTTATGTCCCACCGCCTCCCTCGGAAGAGCAAAAGAAGAAAATTGCAAAGATGGCTGCCATAGGAGAGCAGAAACGCCTTAAAAGCAAGAAGGTGCTTTCAGACAAGAAAGCATTTAGAAGAAGGCACAATAGCACAATCCTCTGATACTACTATAATTTGGACACATACACATTAGATGAATGGTTGAAAATAACCAAGAATTCAANCAACATATCCCCACAGTCAGTCAGCCAGCCTGCCGGAAGGACCTCAAAAGTGGTTTGTGGCTGCATATTGTGTTGGTAGTNAGCCAAAATTGTGATGTAGCTACGATTTAATGCGATTGAATATTTTCAAATAGAAATACCATATGTTGCTTGAATCCATAATGTTTTCTTTGTCATTCAAGCCCTTTCTCGTGACTTGGCAATTATGGGCATTGAANGGACTCAACAACCCTGGGGAACGTGCTTCAACTTAAAAATATGCTGATACACAATTCAGCTGCTCGTACCAGGGATTTTGNCATTTTGGCAGTTGGGAAGGTTGGATCCTTAGTAGATCCGTATGGATTCACTTCCATGATAAAATGTTTAATTTTATCCGAGCAGGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00175	17194	20751	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006415 translational termination

molecular_function
GO:0003747 translation release factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000175s00012026.1	PF00472.15	RF-1	99	209	1.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.520
SRR1783600	control	10.578
SRR1783602	moderate drought stress	9.014
SRR1811619	moderate drought stress	8.946

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.243
DRR006520	Root Summer glycyrrhizin high producing strain	15.218
DRR006521	Root Winter glycyrrhizin high producing strain	14.797
DRR006522	Root Winter glycyrrhizin high producing strain	14.566
DRR006523	Root Summer glycyrrhizin low producing strain	18.996
DRR006524	Root Summer glycyrrhizin low producing strain	18.450
DRR006525	Leaf Summer glycyrrhizin high producing strain	57.143
DRR006526	Leaf Summer glycyrrhizin high producing strain	55.457

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.103
SRR2868004	Drought Stress (root)	13.662
SRR2967015	Control (root)	12.570

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.542
SRR9715740	Leaf	69.973
SRR9715741	Leaf	56.927
SRR9715739	Root	2.940
SRR9715742	Root	5.652
SRR9715743	Root	4.420

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.189
SRR8749028	MeJA induced 9h	22.384
SRR8749029	MeJA induced 9h	19.179
SRR8749030	Uninduced	12.656
SRR8749031	Uninduced	10.927
SRR8749032	Uninduced	8.543

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.765
SRR8400027	Control - Root	19.017