Gene detail information of Glyur000175s00012022 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G60800.1 | 4.00E-101 | DHHC-type zinc finger family protein |
| NR | XP_010098912.1 | 8.55E-156 | putative S-acyltransferase [Morus notabilis] |
| Swissprot | tr|Q8VYP5|ZDH14_ARATH | 8.00E-147 | Probable protein S-acyltransferase 14 |
| trEMBL | tr|W9RJ44|W9RJ44_9ROSA | 3.00E-156 | S-acyltransferase {ECO:0000256|RuleBase:RU079119} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00175 | 6174 | 9287 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000175s00012022.1 | PF01529.15 | zf-DHHC | 77 | 256 | 4.40E-46 |
| Glyur000175s00012022.2 | PF01529.15 | zf-DHHC | 77 | 152 | 4.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.322 |
| SRR1783600 | control | 11.557 |
| SRR1783602 | moderate drought stress | 13.297 |
| SRR1811619 | moderate drought stress | 13.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.233 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.425 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.064 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.347 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.934 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.407 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.909 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.401 |
| SRR2868004 | Drought Stress (root) | 13.428 |
| SRR2967015 | Control (root) | 14.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.359 |
| SRR9715740 | Leaf | 9.140 |
| SRR9715741 | Leaf | 9.182 |
| SRR9715739 | Root | 5.646 |
| SRR9715742 | Root | 3.961 |
| SRR9715743 | Root | 6.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.496 |
| SRR8749028 | MeJA induced 9h | 11.101 |
| SRR8749029 | MeJA induced 9h | 6.338 |
| SRR8749030 | Uninduced | 8.528 |
| SRR8749031 | Uninduced | 10.878 |
| SRR8749032 | Uninduced | 13.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.082 |
| SRR8400027 | Control - Root | 12.804 |