Gene detail

Gene detail information of Glyur000174s00018495

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09620.1	4.00E-38	Octicosapeptide/Phox/Bem1p family protein
NR	XP_004490475.1	1.02E-124	PREDICTED: uncharacterized protein LOC101512371 [Cicer arietinum]
trEMBL	tr\|V7B675\|V7B675_PHAVU	2.00E-102	Uncharacterized protein {ECO:0000313\|EMBL:ESW13299.1}

Sequence

Transcript Sequence

>Glyur000174s00018495.1
ATGGAGAATCACTCCTACTCTTCCCACCCCAATTCCCGCGACTCCTCCCCTCACTCACGCGACACCAACGAGAACAACCACCACTCCTTCGACGAACAACCCCCTCCACCACCTCCTTCCTCCTACAGGGTCAAGCTCATGTGCAGCTACGGCGGCAAAATCCAACCCAGGCCACACGACCACAACCTCTCCTACATCGGCGGCGACACCAAGATCCTCGCCGTCGATCGGAAAATCAGTTTCTCCGCCGTCATGTCCAAGCTCTCCTCCCTCGCCAACTCCTCCGATCTCATCCTCAAGTACCAACTCCCCGGCGAGGACCTCGACGCATTAATCTCCGTCACCAATGACGAGGATCTCGACCACATGATGGTCGAGTACGATCGCCTGTGCCGCTCCTCACCTAGACCCGCACGCCTCAGGCTCTTCCTCTTCCCCCTCAAAAACCACCACGCTCCTAATTCCACCATCAATCACGCGCCGCCGGAATCAAAGCCGGAGCGGCAGTGGTTCCTCGACGCTCTCAATTCCGTTCAGGCTCCGCCTCCGCCGGAAGGCTCTTCTCCGCCACCGTTGCCTCCGGCGAATCCAGATTTTCTGTTCGGATTGGATAACGCGTATCCCGCGGAATCCGCGCCGACGGTTCCGGATTTTGCTGCGAAAGATTCGGCGGCAGGTTCGGAGTGTGGGTCCGAGACGGTTAGAGAACTCGAGATTCAGGAGCTGCAGAGGTTGCAGCTTAATAATGGTAACAATAATAATGAGCAGCAACGGAAAATCGATGAAGAGAACTGTTACACTCAGAAAAACTCCGAGAGTGTGGTGCCGTTAGTGGCAACACATGCAACACCTGCGCAAGTCCATTCCGGTCCGGTTCCGGTTCAGGTTTCTGGACCGGTATCGGTTCAGGGATCGTTTATGCCGGAAATGCATGACCCGCGCGGTGGTGGTTATTCGTTTGCGGTTCATGGAAATGGAACCGAACAGTCTCCGGTTTATCTCATTCAAACACCATCTGGAATGTTCCAAGCCGTGAGGGCGGTAACCGGACCAATCGGTCAACCGGTTTATTTCATTCCAACACCGGGTTCACAATTGCCGCCGCAGCAGCAGCAGCACAAGGTTGCGAATTACAATGGTGGTGGTAATTCAGAGGCTGGTGGTGTAGTTTCAGAGCGCGGCTATTCTCATGTCGCCGCGTACTTGCCTGACAGGTCAGCTTTGCCGCCGCAGGCCGCGGCGGGGCCCGGCGGCGACGTTTGGAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00174	254977	256245	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000174s00018495.1	PF00564.19	PB1	61	146	2.40E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.696
SRR1783600	control	12.568
SRR1783602	moderate drought stress	6.521
SRR1811619	moderate drought stress	6.344

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.916
DRR006520	Root Summer glycyrrhizin high producing strain	16.148
DRR006521	Root Winter glycyrrhizin high producing strain	2.203
DRR006522	Root Winter glycyrrhizin high producing strain	2.428
DRR006523	Root Summer glycyrrhizin low producing strain	12.500
DRR006524	Root Summer glycyrrhizin low producing strain	12.792
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.020
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.216

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.599
SRR2868004	Drought Stress (root)	9.994
SRR2967015	Control (root)	8.765

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.094
SRR9715740	Leaf	3.169
SRR9715741	Leaf	4.695
SRR9715739	Root	14.057
SRR9715742	Root	10.808
SRR9715743	Root	12.393

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.977
SRR8749028	MeJA induced 9h	4.367
SRR8749029	MeJA induced 9h	3.663
SRR8749030	Uninduced	1.718
SRR8749031	Uninduced	0.419
SRR8749032	Uninduced	2.007

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.624
SRR8400027	Control - Root	16.099