Gene detail

Gene detail information of Glyur000174s00018490.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24400.1	0	CBL-interacting protein kinase 8
NR	XP_003519209.1	0	PREDICTED: CBL-interacting serine/threonine-protein kinase 8 isoform X1 [Glycine max]
COG	YP_004571825.1	3.00E-28	serine/threonine protein kinase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q9STV4\|CIPK8_ARATH	0	CBL-interacting serine/threonine-protein kinase 8
trEMBL	tr\|G7K600\|G7K600_MEDTR	0	CBL-interacting kinase {ECO:0000313\|EMBL:AES98330.2}

Sequence

Transcript Sequence

>Glyur000174s00018490.1
GGTTTTTGCATTTTTCGTCTACTATAGTCTTTACCTATCTGCCAATCAACTTCCCTTTCCCACTGCGCACCACACTCCCACTCCCTTCTGCCCTCCTTTCCTTTCCCAATTTCAATTCAATTAATAATTGTTACTAATAATTGGTAAAGCTCGACGAGTGACATGCTTTTGCGGTGTGGTTGTTGTTACTACTAATTGGGAAAAGAGAAGAACAGAAAAGAACACAAAAATCAAAGAGAGAAGAAGAAAAAGCATGGTGTTGAGGAAAGTGGGCAAGTATGAGATTGGAAGGACCATTGGTGAAGGAACCTTCGCGAAGGTCAAGTTCGCTCAGAACACTGAAACTGGCGAGAGCGTCGCCATGAAGGTTCTCGACCGTTCCGCCATCTTCAAGCACAAAATGGTCGACCAGATCAAGAGGGAGATTTCTATTATGAAGCTAGTCAGGCATCCATATGTTGTTCGTCTACATGAGGCATGTGATATTGTTCTGGCAAGCCGTACTAAGATTTATATCATATTGGAGTTCATCACAGGTGGTGAATTGTTTGATAAAATCGTACACCACGGACGTCTTAGTGAAGCTGAATCTAGAAGATACTTCCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCATAGAGATTTGAAGCCAGAAAACCTTTTACTTGATTCACAAGAAAATATAAAGATTTCAGATTTTGGTTTGAGTGCATTGCCAGAACAGGGGGTTAGTATGCTTCGGACAACTTGTGGGACTCCTAATTATGTAGCTCCTGAGGTACTCAGTCACAAGGGTTATAATGGTGCTCCAGCGGATGTTTGGTCTTGTGGGGTTATTCTGTATGTCCTGATGATTGAGAAAGCAGAGTTTTCATGCCCTCCTTGGTTTCCTTTGGGAGCAAAATCTTTGATACATAGAATTTTGGACCCAAATCCTGAACATCGTATAACCATTGAGCAGATTAGAAATGATGAGTGGTTCCAAAAAGACTATGTTCCTGTCCGTCTCCTCGAGTATGAAGATGTAAATCTGGACGATGTAAATGCTGCATTTGACAATGCTGAGGATCAGAGGGCTAATCAGCAATGTGAGAATGAGGACACGGGTCCTCTAATTCTTAATGCATTCGACATGATAATTTTATCTCAAGGCTTAAACCTTGCGTCACTCTTTGATCGTGGGCAGGACACTATGATGTACCAAAAGCGCTTCATCACTCAAACGCCAGCTAAAGTGGTTTTATCAAGCATGGAAGTTGTAGCACAATCAATGGGATTTAAGACGCATATTCGCAACTATAAGATGAGAATAGAGGGTGTTTCAGCAAATAAGGCTTCTTATTTCTCAGTTATACTGGAAGTATTTGAAGTTGCTCCTACATTTTTCATGGTGGACATTCAGAAAGCAGCTGGAGATGCAGATGAATATCTCAAGGTCAGTTTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00174	228662	234411	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000174s00018490.1	PF00069.20	Pkinase	9	213	2.20E-61
Glyur000174s00018490.1	PF03822.9	NAF	292	351	2.20E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.427
SRR1783600	control	6.434
SRR1783602	moderate drought stress	10.948
SRR1811619	moderate drought stress	11.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.137
DRR006520	Root Summer glycyrrhizin high producing strain	22.618
DRR006521	Root Winter glycyrrhizin high producing strain	3.896
DRR006522	Root Winter glycyrrhizin high producing strain	3.792
DRR006523	Root Summer glycyrrhizin low producing strain	24.177
DRR006524	Root Summer glycyrrhizin low producing strain	24.132
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.508
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.428

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.678
SRR2868004	Drought Stress (root)	14.760
SRR2967015	Control (root)	16.240

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.739
SRR9715740	Leaf	9.414
SRR9715741	Leaf	10.711
SRR9715739	Root	1.626
SRR9715742	Root	7.877
SRR9715743	Root	5.423

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.455
SRR8749028	MeJA induced 9h	6.092
SRR8749029	MeJA induced 9h	2.889
SRR8749030	Uninduced	1.395
SRR8749031	Uninduced	0.984
SRR8749032	Uninduced	0.851

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.026
SRR8400027	Control - Root	13.921