Gene detail

Gene detail information of Glyur000174s00018486

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11290.1	2.00E-118	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_003615371.1	0	Pentatricopeptide repeat-containing protein [Medicago truncatula]
Swissprot	tr\|Q3E6Q1\|PPR32_ARATH	2.00E-140	Pentatricopeptide repeat-containing protein At1g11290
trEMBL	tr\|G7K5Z9\|G7K5Z9_MEDTR	0	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:AES98329.2}

Sequence

Transcript Sequence

>Glyur000174s00018486.1
CCCTAACAGTCCCCCCTCCCTCCCAAGCAAGAACGGGATATTTTCCAAGCGAAGCAACCCAATCAATCATGNAAGCAGAAACAGTGGTGATTTTCTGCTATCATTTTCCTTATCCTTCCTTCTTCACAGTCATAGGCTGAGTCTCTGCCACTGCCATGGCTTCTTTACCTTCTGTTGCTGTCACTGCAACTCTTAAGCTCCACCCACAATTCAGAAAATACCTGCCAACCTCCTTTCCCGCAGATAAGGTTCAAAGTATTTCTCTACAGAAAAGCCACATATTCACGCATTTGGATCCCGGGAGGCATCTTGATTTTCGTGAAGCACTCTCATTGGCAAAAGAAGGGACAGAGGAAGTGGAGCCATCATCATCATCTTTCTGCCTTCCCTTGTTGCAAGAATGCTTAGACAAGTGCTCCATTTCAGGCACACAAATAGTTCACGGCCACCTCATGAAAACTGGTAGCCGCAGAGACCTTTTTCTTATGACATTTCTGGTCAAAGTTTATGCCAAATGTGGGAACATGGAGGATGCTCGAAGAGCCTTTGACCACATGCCCACAAGAAACATGTTCTCTTGGACAACCTTAATGGTGGGTTATGTTCAAAACTCTCAACCAAAACATGCCATCCATGTGTTTCAAGAGATGTTGCATGAAGGGAGTTATTACCCTTCCTTTTACACTCTTGCTATTGCTCTTAATGCTTGTACATCACTGAAGTACCCTCTCAAGTTAGGTGAACAGTTCCATGCTTACATAATCAAATACCATGTTGACTTTGACACAAGTGTTGGCAATGCACTTTGTAGTTTATACTCCAAATGTGGCAGGTTGGAATTGGGTCTAAAAGCATTTAGGAGAATCAAGGAAAAGAATGTTATTTCTTGGACTGCAGCTATTTCTGCTTGTGCGGACAATGGTGAAGCTATGAGGGGTTTGAGGCTTTTTGTTGAAATGATTAATTCAGAGGAGGAGGTGCAGCCTAATGAGTACACCTTAACTAGTGTCTTGGGGCAGTGTTGTGAAGTTGTGTCATTACAACTTGGGACTCAGGTTCATTCCTTTTGTACTAAATTGGGGTATGAATCAAACCTACGTGTTAGGAATTCTTTGTTGTATTGGTACCTAAAATGTGGTTGTATTGGTGAGGCTCAAGTGTTGTTTAAGGGAATGGAATGTGTTAGTTTGGTTACATGGAATGCCATGATTGCTGGTCATGCACAAATGATGGAACTTGCAAAGGATGATAATCTTTCTGCATGCCAGAGTGGAAATGAAGCACTCAACCTTTTCTCCAAGTTAAACAGGTCAGGCATGAAGCCTGATGCATTTAGCTTCTCAAGTGTGTTTAGTGTCTGTAGTAGAATGATGGGTTTCGAGCCGGGGGAACAGATTCATGCGATGACCATCAAAAATGGGTTCTTGTCAGATGTGGTTGTGGGTACTTCTCTAGTTAACATGTACAATAAATGTGGAAACATTGAGAGGGCAAGCAAGGCATTTCTAGAGATGTCTACTAGAACAATGATATCATGGACTTCAATGATTGCTGGTTTTGCACAGCACNGTTGGTCAAAGCTAGCATTGCATCTTTTTGAGGATATGAAACTTGTAGGAGTTAGACCAAACCAGATCACTTTTGTGGGTGTTTTATCAGCATGTGGAAGTTCTGGCATGGTCAGTGAAGCATTCAGTTACTTTGAGATCATGCAAAAGGAATATAAAATTAAACCTGTGATGGACCATTATGCTTGCTTGGTTGACATGTTAGTGAGGCTTGGTAGGCTTGAGGAAGCTTTCAATTTTATTACAAAGGAAATGGATTATGAGGCTAGTGAATTTATTTGGTCAAAATTGATTGCTGGTTGTATAAGCCATGGGAATCTGGAACTTGGGTGTTATGCTGCTGAACAGTTACTAAGTCTGAAACCAAAAGATGCTGAGACATATGTTTTGTTGTTGAATATTTACCACTCAGCTGGGAGATTTGATGATGTTGCTAGGGTGAGGAAGATAATGAAAGAGGAGAACATTGGAAAGTTAAAGGATTGGAGCTGGATTAGCATCAAAGGCAGAGTGTATTCATTTGAAACCAATGACAAGGCACACACACAGAGTTCACCAGCTTGTAAATCATTGGAGGATTTACTTGTCAAAGTAAAGAATCTTGGATATGAGGTGTTAGAAAGTATGGAAATAAGTGAGGAAGAGGAGGAGGAGGAAAAGACATCCTCCCCTACCATTTATCACAGTGAGAAGCTGGCTATTGCTTTTGGGTTGGAGAACTTGCCCAATTCTTCACCAATAAGAGTTGTCAAGAGTACCTCAATGTGCAAGGATTGCCATAATTTTATTAAGTATGTCTCAACACTGACTAGTAGGGAAATCATTGTTAAAGATAGTAAGCGGCTACATAAGTTTGTCAATGGACAATGCTCAGACAGAGATGCAGCAAGAGGCGACCAATTGGTTGGTGAGAGTGTTGAAACAGAGACGACGACAAAGGAAGAAGGAACAACCACCAGTACGGGAGCAACCTTGATCGGGTCAGACATTGTGCCACCGCCACCCCCTCCAGAACCGCCAGACATCGTTCGAGGTGCAGTGGCCAAGGAGAGATTCGACAAGAGCAGTGAACCAAATGGGTGGGTCACGGACAAGGGGAACTATTGGTCATTGGGATGGACAACGGAGTTCAAGAGGGGGAATGACTCCGATGTCGTGATGGAGAAGACGAAGATCCCTGTGAGAGGCGTGAGGGGAAAACAAGGAGGAAAGGAGAGGGCGACTGNCGTGCAGATGCGGGTCTCCGGCGAAGCGCTCAACCTACAACCGTTGTCCAATTCATCCGACTCGAGGTCGCCGAGGGAGAGGATGGGACCTGCAACGGTGAGGACATCATGGGTNTTTGATGTTCCAGTTGAGCTACCCACACCGCAGCCACCGAATAAGGTTATAGTCCCGACGCCACCACCGCTCAAAAGGGAGGAGGCTTGGCAGCGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00174	221944	226000	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000174s00018486.1	PF13812.1	PPR_3	111	135	0.017
Glyur000174s00018486.1	PF01535.15	PPR	140	169	7.90E-05
Glyur000174s00018486.1	PF13041.1	PPR_2	240	291	8.40E-08
Glyur000174s00018486.1	PF13041.1	PPR_2	346	403	1.30E-07
Glyur000174s00018486.1	PF01535.15	PPR	431	454	0.3
Glyur000174s00018486.1	PF01535.15	PPR	459	488	0.00045
Glyur000174s00018486.1	PF01535.15	PPR	495	522	0.005
Glyur000174s00018486.1	PF14432.1	DYW_deaminase	682	756	3.20E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.701
SRR1783600	control	0.694
SRR1783602	moderate drought stress	0.038
SRR1811619	moderate drought stress	0.038

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.687
DRR006520	Root Summer glycyrrhizin high producing strain	1.750
DRR006521	Root Winter glycyrrhizin high producing strain	0.371
DRR006522	Root Winter glycyrrhizin high producing strain	0.326
DRR006523	Root Summer glycyrrhizin low producing strain	0.406
DRR006524	Root Summer glycyrrhizin low producing strain	0.368
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.391
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.503

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.024
SRR2868004	Drought Stress (root)	0.921
SRR2967015	Control (root)	1.888

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.805
SRR9715740	Leaf	5.183
SRR9715741	Leaf	1.719
SRR9715739	Root	0.033
SRR9715742	Root	0.381
SRR9715743	Root	0.394

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.357
SRR8749028	MeJA induced 9h	0.145
SRR8749029	MeJA induced 9h	0.242
SRR8749030	Uninduced	0.106
SRR8749031	Uninduced	0.051
SRR8749032	Uninduced	0.174

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.613
SRR8400027	Control - Root	1.018