Gene detail

Gene detail information of Glyur000174s00018485.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37930.1	0	serine transhydroxymethyltransferase 1
NR	XP_004490468.1	0	PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Cicer arietinum]
COG	YP_001180837.1	4.00E-118	serine hydroxymethyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|P34899\|GLYM_PEA	0	Serine hydroxymethyltransferase, mitochondrial (Precursor)
trEMBL	tr\|V7B8V9\|V7B8V9_PHAVU	0	Serine hydroxymethyltransferase {ECO:0000256\|RuleBase:RU000585}

Sequence

Transcript Sequence

>Glyur000174s00018485.1
CCCAAACGCGAGACAGACAGAAAAAAGAAGCACCACACCACACCACACCACAATGGCCATGGCTCTTCGCAGACTTTCCTCCACCATCAACAAACCAAACGCCGCTTCTGTTTATCGCATGTCTTCTTCGCTCTCCGCGCAATCTCGTNCTGTCGGGCTAGAACTTATACCTTCAGAAAATTTCACGTCGTTGTCAGTGATGCAAGCCGTTGGATCGGTGATGACAAATAAATATAGTGAAGGGTATCCCGGTGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTAGAAGCTTTTCGGTTGGATCCAGCAAAATGGGGAGTCAATGTGCAGTCATTATCTGGATCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCCCACGGTGGNCATCTATCACATGGCTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGGATGAGAGCACTGGTTATATTGATTATGACCAGGCCGCTCCCACAAGTAAGGTATGCAGNAGGGAGAAGGGAATTGCTGCAGAGGATTTGGGAACAAGTTTGGAGAAGAGTGCTGCGCTTTTTAGGCCAAAGTTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTANGCACGTATTCGCAAGGTCTGTGATAAACAGAAGGCAATTATGTTGGCTGATATGGCACACATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACTACCACAACACATAAGTCACTTCGTGGACCACGCGGGGCTATGATCTTCTTCAGGAAGGGTGTGAAAGAGATCAACAAGAAAGGGCANGAAGTGTTGTATGACTTAGAAGACAAAATAAATCAGGCTGTTTTCCCTGGACTTCAAGGTGGTCCCCACAATCACACTATTGCAGGCTTAGCAGTTGCATTAAAGCAGGCCATGACGCCAGAATTCAAGAATTACCAAAAGCAAGTTCTTAGTAACTGCTCGACATTTGCAGAGAGTTTGTTAGAGAGAGGCTATGAACTTGTATCTGGTGGAACTGAAAACCATTTAGTGTTGGTGAACTTAAGAAACAAGGGCATTGATGGCTCGAGGGTTGAGAAGGTGTTAGAATCAGTTCATATAGCTGCCAATAAAAATACCGTTCCAGGNGATGTGTCTGCTATGGTTCCTGGAGGCATTAGAATGGGAACCCCTGCTCTCACATCCAGGGGATTTGTTGAGGAAGATTTTAAGAAAGTAGCCGAATACTTCGATGCGGCAGTCAANATAGCCTTACAGATTAAGGAAAATGCGAAAGGTACAAAGTTGAAGGATTTTGTGGAAGCTATGCAGTCAGATACACAAATTCAATCTCAGATTGCTAATCTCCGTCATGAAGTAGAGGATTATGCTAAGCAGTTTCCCACGATTGGTTTTGAAATAGAGACAATGANGTATAGTAAGTGAAGATGACACGAAACTTTGGAGGTTTATTTGGTAGTTTTTGGAAGAATAACGAGGATTTGGATATGTTGCTTAATGGATTTGTACCCGAGTCTTTGAAGAAATTGTGAATCATAGTATCAAAATGGTTTAAGTGAAAGAGAAAAGGGGAAATTTTCGCTTCAGTAATAAACCATTTATAGGGTTGAGCAGCAGTTTCTCTCAAACTTGAGAAAACATAATAATTTAAAGTTGAAAATTCCTTTTGGTGGTCAGTGTTGTAATGTAGCAAAAATGAGGTTGAGCATTTGTGGATCTTCCTATTTGCTTAATTTGTATTAAAGCAATCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00174	204508	212948	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00600	glyA, SHMT	EC:2.1.2.1	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Glyoxylate and dicarboxylate metabolism	map00630
			Methane metabolism	map00680
			Glycine, serine and threonine metabolism	map00260
			Cyanoamino acid metabolism	map00460
			One carbon pool by folate	map00670
			Antifolate resistance	map01523

Gene Ontology

biological_process

GO:0006544 glycine metabolic process

GO:0006563 L-serine metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004372 glycine hydroxymethyltransferase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000174s00018485.1	PF00464.14	SHMT	33	433	2.90E-194

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.254
SRR1783600	control	42.699
SRR1783602	moderate drought stress	31.634
SRR1811619	moderate drought stress	30.699

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	87.660
DRR006520	Root Summer glycyrrhizin high producing strain	85.909
DRR006521	Root Winter glycyrrhizin high producing strain	21.465
DRR006522	Root Winter glycyrrhizin high producing strain	21.094
DRR006523	Root Summer glycyrrhizin low producing strain	33.728
DRR006524	Root Summer glycyrrhizin low producing strain	34.501
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.008
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.031

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	88.631
SRR2868004	Drought Stress (root)	76.232
SRR2967015	Control (root)	80.783

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.247
SRR9715740	Leaf	15.150
SRR9715741	Leaf	19.998
SRR9715739	Root	7.976
SRR9715742	Root	31.455
SRR9715743	Root	28.145

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.600
SRR8749028	MeJA induced 9h	38.717
SRR8749029	MeJA induced 9h	41.889
SRR8749030	Uninduced	16.407
SRR8749031	Uninduced	14.313
SRR8749032	Uninduced	14.747

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	70.462
SRR8400027	Control - Root	83.791