Gene detail information of Glyur000174s00018480 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57230.1 | 2.00E-47 | AGAMOUS-like 16 |
| NR | XP_006596388.1 | 1.81E-108 | PREDICTED: MADS-box transcription factor 27-like isoform X1 [Glycine max] |
| Swissprot | tr|Q6EP49|MAD27_ORYSJ | 4.00E-60 | MADS-box transcription factor 27 |
| trEMBL | tr|K7M7U5|K7M7U5_SOYBN | 2.00E-106 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G36221.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00174 | 133073 | 161470 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000174s00018480.1 | PF01486.12 | K-box | 37 | 127 | 1.20E-24 |
| Glyur000174s00018480.2 | PF01486.12 | K-box | 37 | 127 | 1.90E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 50.072 |
| SRR1783600 | control | 52.342 |
| SRR1783602 | moderate drought stress | 44.850 |
| SRR1811619 | moderate drought stress | 45.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.752 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.968 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.593 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.539 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.756 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.398 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.441 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.486 |
| SRR2868004 | Drought Stress (root) | 66.634 |
| SRR2967015 | Control (root) | 70.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.793 |
| SRR9715740 | Leaf | 1.079 |
| SRR9715741 | Leaf | 2.220 |
| SRR9715739 | Root | 1.146 |
| SRR9715742 | Root | 7.248 |
| SRR9715743 | Root | 5.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 149.186 |
| SRR8749028 | MeJA induced 9h | 116.411 |
| SRR8749029 | MeJA induced 9h | 222.122 |
| SRR8749030 | Uninduced | 201.204 |
| SRR8749031 | Uninduced | 413.350 |
| SRR8749032 | Uninduced | 247.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.628 |
| SRR8400027 | Control - Root | 21.349 |