Gene detail

Gene detail information of Glyur000174s00018477.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G24430.1	Rhamnogalacturonate lyase family protein
NR	AES98299.2	rhamnogalacturonate lyase B-like protein [Medicago truncatula]
trEMBL	tr\|G7JYH9\|G7JYH9_MEDTR	Rhamnogalacturonate lyase B-like protein {ECO:0000313\|EMBL:AES98299.2}

Sequence

Transcript Sequence

>Glyur000174s00018477.1
CTAGTGAAGATCCTTCAACAATGTGCTCACAAGCAGTGCAGTTGCATATCAAAGACAATTATGTGGTTATGGACAATGGTATACTACAGGTGTATATATCCAATCCGGGTGGATTTGTGACTAGAATACAATACAATGGCATTCAGAATCTGCTTGAATTTCTTAGCGAAAGGAATAATAGAGGGTATTGGGATGTCGTTTGGAGTGAAGCAGGAAGTACAGGAACAACTGGGACATTTGAGCGGTTCGTAGGAACAAGTTTTCATGTTATAGTGGAAAATGAGGAACAGGTTGAAGTCTCATTTACAAGAACATGGGATCCATCTCTGAAGGGAAAGCTNTCACCTCTAAATATCGACATAAGGTATGTGATGCTTCGTAATTCCTCAGGATTCTACTCTTACGCCATCTTTGAACACCTAAAGGAGTGGCCTGCTTTCAACATACCTCAAATCAGGATTGTTTATAAGCTTCGAAAAGACAAGTTTCATTACATGGCTGTGGCGGATAATAGACAAAGATTCATGCCTCTCCCTGATGATCGATTACCAGGAAGAGGAGAAGAACTAGTTCCCCCTGAAGCAGTTTTGCTCGTCCATCCCGTGGAACCAGAGTTCACAGGAGAGGTGGACGATAAGTATCAGTACTCAAGTGAAAACAAAGATCTTAAGGTCCATGGCTGGATAAGTCCAGAATCAGAAACTGATCCAACCATGGGGTTCTGGGTAATCATACCCAGCAATGAGTTCCGATCAGGTGGCCTTGTGAAACAGAACCTTACCTCTCATGTTGGCCCCATCAGCCTCGCAATGTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTTCTTAAACTCCAGCCGAATGAGGCATGGAAGAAAGTTTTTGGGCCAACTTTTGTCTATCTTAACACTTTGTTGGATCGTGATGAGGACCCTCTAGAGCTCTGGGAAGACGCCAAACATCAGATGAACAAGGAAGTTCAGAGTTGGGCCTATGATTTTCCAGCTTCGGATGATTTTCAAAAGTCTAGCCAACGGGGCAGTGTGTGTGGCACGTTACTAGTTCGAGACAGGTGCCTAAGTGACGAGTACATAATAGCAGAAGGCGCATACGTAGGATTGGCACCACCAGGAGACGTTGGATCCTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACTAGAACAAACGAGGAAGGCTATTTTTCAATCAACAATATACAGAGTGGAGATTACAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGAATATTGGAACAATGTTATCCTCCAAATAACCCCAGATGGCCCAACATTATGGGAGATTGGGATTCCTGATCNCTCAGCTGCTGAGTTCTATGTTCCTGATCCTAATCCAAAGTACATCAACAAGCTCTATGTCGACCATCCAGACAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGAATTATACCCAAATGATGATTTGATTTATACAGTTGGTGTCAGTGACTACACAACAGATTGGTTCTTTGCACAGTTCAACCTTGATAACGTGGAGGCAAGTGGAATCTATAAATTGCGTTTGGCGCTTGCAAGTGCAAATGTCTCCGAATTANAGGTTAGAGTGAATGATCTAAAACAAGACCCTCCACTATTTACTACGGGGGTGATTGGGAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTATTCAACATTGATGTGCCTGGGGTTCTGCTATTGGAAGGCGATAACACTATATTCCTAACACAGACTATGGCTTCTGGCCCCTTGGCTCTCTTTCAGGGGATAATGTATGACTATATTCGTTTAGAATGCCCCAACCCTTTTGTTCCCATCAAAGAAAATTAAATTATAGTTTAGTCAATATGAACCAGCTCTGCTCCCCACCACACCTTTTATTACAATTTCACATACTTGTTTGTCTTTGTTCTGTCACTTCTGTGTTTCAAGCATAAGAAGAACTTTGAGTAGATTACAAATTGCAGGCATTACACAAAGATCCATTTTGCTGGCACACAAATATAACTAGGATCTGCTTTTTGTTTGCTAATTTGCTAATGGGGCCCAGATTTTCGTCAAAAAAAGTGAATCACCAAAATCTGAAATTGTAGAATATTATCAACTTGGTCTTTAAAATTGTTAATATTCCAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00174	55988	62773	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	PL4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000174s00018477.1	PF06045.6	Rhamnogal_lyase	3	203	1.10E-89
Glyur000174s00018477.1	PF14686.1	fn3_3	339	428	2.10E-24
Glyur000174s00018477.1	PF14683.1	CBM-like	432	606	2.70E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.887
SRR1783600	control	1.868
SRR1783602	moderate drought stress	1.017
SRR1811619	moderate drought stress	1.013

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.707
DRR006520	Root Summer glycyrrhizin high producing strain	4.677
DRR006521	Root Winter glycyrrhizin high producing strain	0.131
DRR006522	Root Winter glycyrrhizin high producing strain	0.149
DRR006523	Root Summer glycyrrhizin low producing strain	0.631
DRR006524	Root Summer glycyrrhizin low producing strain	0.752
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.648
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.787

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.062
SRR2868004	Drought Stress (root)	4.953
SRR2967015	Control (root)	3.187

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.891
SRR9715740	Leaf	0.222
SRR9715741	Leaf	0.198
SRR9715739	Root	1.205
SRR9715742	Root	4.442
SRR9715743	Root	3.692

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.105
SRR8749028	MeJA induced 9h	0.153
SRR8749029	MeJA induced 9h	0.044
SRR8749030	Uninduced	0.141
SRR8749031	Uninduced	0.445
SRR8749032	Uninduced	0.293

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.247
SRR8400027	Control - Root	10.118