Gene detail information of Glyur000174s00018471 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74520.1 | 5.00E-14 | HVA22 homologue A |
| NR | XP_003544251.1 | 0 | PREDICTED: uncharacterized protein LOC100787629 [Glycine max] |
| Swissprot | tr|Q9S7V4|HA22A_ARATH | 8.00E-16 | HVA22-like protein a |
| trEMBL | tr|K7M7T9|K7M7T9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G36165.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00174 | 4654 | 8658 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000174s00018471.1 | PF03134.14 | TB2_DP1_HVA22 | 22 | 109 | 1.40E-14 |
| Glyur000174s00018471.1 | PF12874.2 | zf-met | 197 | 221 | 2.60E-06 |
| Glyur000174s00018471.1 | PF13456.1 | RVT_3 | 315 | 394 | 2.90E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.006 |
| SRR1783600 | control | 6.035 |
| SRR1783602 | moderate drought stress | 3.754 |
| SRR1811619 | moderate drought stress | 3.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.847 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.836 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.005 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.873 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.730 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.290 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.685 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.746 |
| SRR2868004 | Drought Stress (root) | 13.076 |
| SRR2967015 | Control (root) | 13.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.679 |
| SRR9715740 | Leaf | 21.959 |
| SRR9715741 | Leaf | 31.721 |
| SRR9715739 | Root | 1.459 |
| SRR9715742 | Root | 6.951 |
| SRR9715743 | Root | 6.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.706 |
| SRR8749028 | MeJA induced 9h | 7.965 |
| SRR8749029 | MeJA induced 9h | 5.755 |
| SRR8749030 | Uninduced | 2.530 |
| SRR8749031 | Uninduced | 3.457 |
| SRR8749032 | Uninduced | 1.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.193 |
| SRR8400027 | Control - Root | 10.126 |