Gene detail

Gene detail information of Glyur000173s00011845

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07700.2	0	Protein kinase superfamily protein
NR	XP_004502149.1	0	PREDICTED: uncharacterized protein sll1770-like isoform X1 [Cicer arietinum]
COG	YP_722994.1	0	hypothetical protein Tery_3425 [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q9MA15\|Y1796_ARATH	2.00E-65	Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic (Precursor)
trEMBL	tr\|V7BLS3\|V7BLS3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17990.1}

Sequence

Transcript Sequence

>Glyur000173s00011845.1
AAAGAGTACCATACGTTATATTCACCGAAGAATGAGATACATGCGGTTCAAAGAGTCCCACAACACCCACATGAATTCAAGCTTCTGAATGGTGGTAGTCGAAGATCCCACTTCTGTTTTGTCGTCTATTATATCGAAACTAAAGTAAAACAAACATTGAAAATAAAAATCAACAATGCTTCATGTGCCACCACTTGCCTGACGGTTGAAACTTGGAAGCAACACGAACATCCTCCTAGTACCTCTGTGGTCCTTTGAGGTTGAGGTTGAGGGTGTCTGTCTCTGTTACTGTTATCACTGGTTAGGTTAGGTAACATCACCATAAATGGCAGTAATAATGGCTTTGAATGGCTGTTATGGTAACAATATAGAGTCGGCAAATCAACGAGGAGCACTAGACAATCTTGGTTTTACAAGCTCAATCTCAGTTCATAAATTGTCAAAGAATAAAAGGTCAACANCTGATAGGTCACGGCATGGTAAACTTCATCGGTTCCTGGTGGAGATGCGACAGACAGAATTGCCTCCATCGAAATATGGTACTAATGGTAGAGCTGTTAAAATGGTACCAGCAAATGAGGTAGTGAAAAGAAAGACAATGTCAGAGAATAAAGTGGAGATGGTGAATGGTACAACTTCAAAGCAAGCTGTTAACGGAGCAAGTTTGGTAAGAAGAGATCCTGTCCCGGCCTTGGCAAAGACAGTGAAATCTAGAACCTCTAAAGAGCTTCCACCATTGGAAGAGCTAAAAGTTTTGCCCTCAGATGAAGGCTTCAGTTGGGCCAATGAAAATTACAATTCCTGGCAGAGGTCTATTGATGTTTGGTCCTTTGTTATTTCTTTACGTGTTCGTGTTCTGTTGGACAATGCAAAATGGGCATATTTGGGTGGCTTTACAGAAGAAAAGCAGAAAAGCAGAAGGCGGAAAACTGCATCATGGCTAAGGGAGTGTGTATTACAGCTCGGTCCAACTTTCATTAAACTTGGCCAGTTATCATCAACAAGGTCAGATCTATTTCCCCGTGAATTTGTGGANGAACTTGCAAAATTGCAGGACAAGGTCCCCGCTTTCTCCCCAAAGAAAGCAATAGGCTTTATTGAGAGTGAACTAGGAGCTCCCATTAATGTATTGTTTAAAGAGTTTGAAGATCGGCCAATTGCGGCTGCAAGTCTTGGTCAGGTTCATCGTGCTATTCTGCACAATGGAGAAAAAGTAGTTGTCAAAGTTCAAAGGCCTGGTCTGAAGAANCTTTTTGACATTGACTTGCGAAACTTAAAGCTGATTGCAGAGTATTTTCAGAAAAGTGAAACTCTAGGTGGTCCAACTAGAGATTGGGTTGGTATATACGAAGAATGTGCAACGATTTTGTACCAAGAAATCGATTATATTAATGAAGGGAAGAATGCTGATAGGTTTCGCCGAGATTTTCGAAACATAAAGTGGGTCCGAGTGCCTCTGATTTATTGGGATTACACTGCATCAAAGGTGTTGACCTTGGAGTATGTACCAGGTATCAAAATAAATCAAGTGGATACGTTGACTTCACGTGGTTATGATCGATTACGGATCTCATCACGTGCTATTGAGGCGTACTTGATTCAGATATTGAAAACAGGTTTCTTTCATGCTGATCCACATCCTGGAAATCTTGCTATTGATGTTGATGAAACACTTATTTATTATGACTTTGGCATGATGGGGGAGATAAAAACTTTCACCCGAGAGAGATTGCTTGAACTGTTTTATGCTGTTTACGAGAAGGATGCCAAAAAGGTTATGCAATGCCTTATAGATCTTGGAGCACTCCAACCCACTGGGGACTTGTCATCGACACCCGATCAACAGCAGACATTGTCTGCAATTGGGGAGGATTTGTTTGCAATAGCACAAGACCAGCCATTCCGGTTTCCATCCACCTTCACCTTTGTTATTAGAGCATTTTCTACACTTGAAGGCATAGGTTACATACTCAATCCAGATTTCTCCTTTGTGAAGATTGCTGCACCCTATGCACAGGAACTTTTAGATGTAAGACAAAAGCGGCGCACCGGGCCACAACTCGTGGAGGAGATAAGGAAGCAAGCAGATGATGTAAGAACCAATTCCATTTCAATGCCATACAGAGTTCAAAGAATAGAGGAGTTTGTAAAGCAAGTTGAGGCNGGGGATCTGAAACTCCGAGTTCGGGTGCTAGAGTCTGAAAGAGCTGCTCGGAAAGCAACAGTATTACAAATGGCTACTATGTACACGGTATTAGGAGGAACCCTGCTAAACATTGGTGTCTCTTTGAGTAGCCAAGGCAATCAAGTTTTTGCAAATGGATCATTTGTTGGTGCAGGTGTTTTTTTGACACTACTTCTAAGGTCTATGCAAAGGGTAAAGAAGCTTGATAAGTTTGAGAACATGTTATAATTGTCCCTACAACTTCAATTCCTTCCAGTATATACAAAAAATAGTCTTGATNTCCGTTTTCTCATTTAAACATTGACATTCAATTTTTTCACATACGCATAGTAAGCTATACGAATACAAGTTTTACAGAAACAAGGTTGTGAAGTGTTGAAACTGCAAGAAACCATTCCTTCATGATAAATAAAATATCATTGTTGAAATCNCATATTGACTAGAGATATGACCAATATAGTCNTTATAAGGCATGGNCAGTTCTCACNTCATAGGCTGATTTTGTGGAATTGAATTAAGNCCTTATAAGATACAAAAATCTAAGAATCATAGGAGGGGAGAAATCGGCNATTTAACCATGGGCATGATAATTGGTGAAACAACTTTTTGTTTTCCACATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00173	267844	281234	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000173s00011845.1	PF03109.11	ABC1	261	380	1.70E-37
Glyur000173s00011845.2	PF03109.11	ABC1	261	380	1.60E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.722
SRR1783600	control	3.713
SRR1783602	moderate drought stress	2.434
SRR1811619	moderate drought stress	2.417

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.876
DRR006520	Root Summer glycyrrhizin high producing strain	3.779
DRR006521	Root Winter glycyrrhizin high producing strain	4.414
DRR006522	Root Winter glycyrrhizin high producing strain	4.185
DRR006523	Root Summer glycyrrhizin low producing strain	7.539
DRR006524	Root Summer glycyrrhizin low producing strain	7.539
DRR006525	Leaf Summer glycyrrhizin high producing strain	78.613
DRR006526	Leaf Summer glycyrrhizin high producing strain	78.373

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.868
SRR2868004	Drought Stress (root)	18.534
SRR2967015	Control (root)	14.770

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	87.952
SRR9715740	Leaf	117.818
SRR9715741	Leaf	89.698
SRR9715739	Root	0.456
SRR9715742	Root	3.911
SRR9715743	Root	3.531

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.683
SRR8749028	MeJA induced 9h	7.752
SRR8749029	MeJA induced 9h	3.157
SRR8749030	Uninduced	7.775
SRR8749031	Uninduced	5.598
SRR8749032	Uninduced	3.002

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.224
SRR8400027	Control - Root	8.744