Gene detail

Gene detail information of Glyur000173s00011838

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38940.1	0	phosphate transporter 1;4
NR	XP_004502147.1	0	PREDICTED: probable inorganic phosphate transporter 1-5-like [Cicer arietinum]
COG	YP_002121359.1	2.00E-85	General substrate transporter [Hydrogenobaculum sp. Y04AAS1]
Swissprot	tr\|Q96303\|PHT14_ARATH	0	Inorganic phosphate transporter 1-4
trEMBL	tr\|B2G3Q0\|B2G3Q0_MEDTR	0	Phosphate transporter {ECO:0000313\|EMBL:CAQ42956.1}

Sequence

Transcript Sequence

>Glyur000173s00011838.1
ATGGCTAGTGGTCAACTAGGAGTTCTGAATGCCCTTGATGCAGCCAAGACACAATGGTACCATTTCACAGCCATCATAATAGCTGGCATGGGATTCTTCACAGATGCATATGACCTCTTCTGCATCCCCAACGTTACCAAGTTGCTAGGAAGAATCTACTACACAGAGGAAGGTGCACCAAAACCCGGAACCTTGCCNCCAAACGTGTCAGCAGCAGTGAATGGTGTTGCCCTCTGTGGTACTTTAGCAGGCCAACTCTTCTTCGGTTGGCTTGGTGACAAAATGGGTAGAAAAAAAGTCTATGGCCTCACCCTTGCCCTTATGGTGTTCTCCTCTCTTGCCTCTGGCCTTTCTTTTGGCAAATCAGCAAAGGGTGTCATCACCACACTTTGCTTCTTCAGATTCTGGCTTGGTTTTGGGATTGGTGGTGACTACCCTCTCTCTGCCACCATCATGTCAGAGTATGCAAACAAGAGAACACGTGGGGCTTTCATAGCCTCGGTTTTCGCCATGCAAGGCTTTGGAATCNTTGCTGGTGGGATTGTTTCCCTCGCAGTTTCAAGGGCCTTCAATAATGGATACAAGGCTCCACCTTACAAAGATGACCCTGCTGCATCCCTTGTTCCTGAAGCTGACTATGTGTGGCGCATCATTCTCATGTTTGGTGCTCTTCCTGCTGCTCTCACTTACTACTGGCGCATGAAGATGCCCGAGACAGCAAGGTACACAGCACTTGTTGCCAAGAATGCAAAACAAGCTGCACAAGACATGTCAACGGTGCTGCAGGTTGAGATTGAANCTGAGCAAGAGAAGTTAGATAAGATATCCGAGAGAGAAGGGAACAACTTTGGTTTGTTTAGCAGGGAATTTGTTCGAAGGCATGGACTTCACTTGCTTGGAACAGCTTCCACTTGGTTTCTTCTTGACATTGCTTACTACAGTTCAAACCTTTTCCAAAAGGATATCTATAGCAGCATTGGGTGGCTTCCTCCTGCTGCAGAAATGAATGCAATTCAGGAAGTTTACAAGGTTGCTAGAGCATCAACACTGATAGCACTTTGTGGAACTGTGCCAGGTTACTGGTTCACAGTGGCCTTTATAGACATCATTGGTCGTTTCATCATCCAGCTTATGGGGTTCTTCTTCATGACAGTGTTCATGTTTGCACTTGCCATCCCATATCACCACTGGACCAAGAAGGAGAACAGGATTGGGTTCCTTGTCATGTATGCATTCACTTTTTTCTTTGCCAANTTTGGTCCAAACTCCACCACTTTTGTGGTGCCTGCAGAGATCTTCCCAGCAAGGTTGAGGTCTACATGCCATGGCATATCCTCCGCGGCAGGGAAAGCTGGAGCCATTGTGGGTGCGTTTGGGTTCTTGTATGCTTCACAGAGCAAGGATCCTGCAAAGAGAGATGCAGGGTACCCTGCTGGTATTGGCATGAAGAACACTCTTATCTTGCTTGCTGTGGTCAACTGTCTTGGCATGTTTTTNACCTTCCTGGTGCCTGAGTCTAAAGGGAAATCGTTGGAGGAGTTGAGTGGAGAGAATGAAGATGAAGGTACTGATGAGACTACTGTTGATCAACAAGCCTCCTCTAGTAGGACTGTTCCAGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00173	225369	226991	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006817 phosphate ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005315 inorganic phosphate transmembrane transporter activity

GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000173s00011838.1	PF00083.19	Sugar_tr	30	515	9.80E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.057
SRR1783600	control	18.478
SRR1783602	moderate drought stress	16.275
SRR1811619	moderate drought stress	17.598

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.587
DRR006520	Root Summer glycyrrhizin high producing strain	0.565
DRR006521	Root Winter glycyrrhizin high producing strain	0.274
DRR006522	Root Winter glycyrrhizin high producing strain	0.209
DRR006523	Root Summer glycyrrhizin low producing strain	1.057
DRR006524	Root Summer glycyrrhizin low producing strain	0.774
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.147
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.986

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.359
SRR2868004	Drought Stress (root)	68.989
SRR2967015	Control (root)	63.771

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.971
SRR9715740	Leaf	19.483
SRR9715741	Leaf	19.798
SRR9715739	Root	65.468
SRR9715742	Root	18.029
SRR9715743	Root	30.704

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	402.603
SRR8749028	MeJA induced 9h	528.374
SRR8749029	MeJA induced 9h	274.588
SRR8749030	Uninduced	221.368
SRR8749031	Uninduced	109.199
SRR8749032	Uninduced	127.211

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.113
SRR8400027	Control - Root	23.171