Gene detail

Gene detail information of Glyur000173s00011837

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G18390.1	2.00E-86	ADP-ribosylation factor family protein
NR	XP_003517238.1	4.18E-123	PREDICTED: ADP-ribosylation factor-like protein 2-like [Glycine max]
COG	YP_001737337.1	5.00E-26	small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
Swissprot	tr\|Q9ZPX1\|ARF5_ARATH	6.00E-113	ADP-ribosylation factor-like protein 2
trEMBL	tr\|I1LHS7\|I1LHS7_SOYBN	2.00E-123	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G07330.1}

Sequence

Transcript Sequence

>Glyur000173s00011837.1
CCCCGATCGAACCTCTGAACCTCAAACCCCTACGGTTCAGTGACCGATCCGATTTTAACTACCTTGTCTAATTCTCCCTCTCTTCTCTCTTTTTTTTATTGGTGCAGAAGCAAGAGAGGATTGAAGTTGGCTTGAGAGTCTACCCCANCAATCCCCCTACGCTTCTCACGCTCGCGATTTCAGGTTCGTGTTTTGCTGCGATTTCTCAAGCCGCTAAGGTTTCGCCCCCATTTGCATTGAATCTTCGANCACCGTTCACATCATTTGCTCCTGTGCCATTTCTATCTCATTAAGTGTATTTCGTATTGCTCATTGCTCTGCTGTTCTCTTCTTCCATGAAGTTATTCAAGTTTTGACGACCTCTCTGGGAATGGGTCTTCTCCACATCATTCGGAAAATCAAAAGGAAAGAAAAAGAAATGCGGATTCTTATGGTTGGGTTGGACAATTCTGGGAAAACGACAATCGTTTTGAAGATTAACGGGGAGGACACTAGTGTCATCAGCCCTACCCTTGGCTTCAACATCAAAACTATNACCTACCAGAAGTACAATCTAAATATATGGGATNTTGGGGGCCAAAAAACAATACGATCTTACTGGAGAAACTACTTTGAGCAAACAGATGGTTTGGTTTGGGTAGTTGACAGCTCAGATTTGAGAAGGTTGGATGANTGCAAAATGGAGCTAGATAACCTTCTAAGGGAAGAGAGGCTATCTGGAGCATCGTTACTGATACTAGCCAATAAACAAGATATTAAAGGCGCCCTTGCACCCGAAGAAATAGCTAAGGTGCTGAACTTGGAAGCTATGGATAAATCTCGGCACTGGAAGATAGTTGGCTGTAGCGCATACAGTGGTGAGGGTCTGCTTGAGGGATTTGATTGGTTGGTCCAGGACATAGCCTCTAGAATCTACTTGCTTGACTAATGATTGTTATGCTACTATCCAAGAAATAGTTCAAAATGCAAACTTAGAATTTAGAAGAGCATTCTTAAACTGAATACACTGCCTTTGGAAGACGTTGTCGGGTGCAACACTAAGATGTTCCAGATAGGATTATTTTCATCATTTTTATTCAAGTTTGTAGTCTAGTCAGTGAACTAAGCTTGTTTGTTTTAAATTTTTAATGTGAATATGTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00173	220971	224177	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0007264 small GTPase mediated signal transduction

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000173s00011837.1	PF00025.16	Arf	4	177	3.80E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.600
SRR1783600	control	5.632
SRR1783602	moderate drought stress	11.816
SRR1811619	moderate drought stress	10.880

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.860
DRR006520	Root Summer glycyrrhizin high producing strain	7.223
DRR006521	Root Winter glycyrrhizin high producing strain	9.009
DRR006522	Root Winter glycyrrhizin high producing strain	7.474
DRR006523	Root Summer glycyrrhizin low producing strain	1.754
DRR006524	Root Summer glycyrrhizin low producing strain	1.612
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.095
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.970

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.137
SRR2868004	Drought Stress (root)	8.404
SRR2967015	Control (root)	10.486

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.859
SRR9715740	Leaf	6.461
SRR9715741	Leaf	7.089
SRR9715739	Root	2.902
SRR9715742	Root	4.273
SRR9715743	Root	3.001

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.328
SRR8749028	MeJA induced 9h	36.105
SRR8749029	MeJA induced 9h	22.883
SRR8749030	Uninduced	29.489
SRR8749031	Uninduced	20.424
SRR8749032	Uninduced	15.920

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.265
SRR8400027	Control - Root	17.289