Gene detail

Gene detail information of Glyur000173s00011836

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07670.1	2.00E-125	Rubisco methyltransferase family protein
NR	XP_003542190.1	8.84E-179	PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Glycine max]
Swissprot	tr\|P94026\|RBCMT_TOBAC	1.00E-18	Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic (Precursor)
trEMBL	tr\|G7J8U8\|G7J8U8_MEDTR	5.00E-179	Uncharacterized protein {ECO:0000313\|EMBL:AFK38105.1}

Sequence

Transcript Sequence

>Glyur000173s00011836.1
CTGATCTAGGAAATGGAAACTTGATTGTGGTTCTGTTTGGGTGTGGGTGTCTTTGTGTATTCTGGTTATCAGGAGTGGAGCTGCCCAGAAGCTGGTGAGGTATTGAAAAGGAATGCAGTACCAGATTGGCCATTTCTTGCAACTTACCTCATAAGTGAAGCTAACCTCATGAAATCTTCAAGATGGTACAATTATATATCGGCCTTACCTCGTCAGCCNTACTCACTTCTTTACTGGTCACAAGNAGAACTAGATCGCTACTTGGAAGCTTCGCAGATTAGGGCGAGAGCAATGGANAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACCCTGATTTCTTCCCTGAAGAGGTGTTCAACATAGAGTCCTTCAAATGGTCATTTGGCATTCTTTTCTCCCGCTTGGTTCGGTTACCCTCAATGGATGGAAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTGTGATGTGGAGACGTTTTTGGATTATGATAAGGCATCAAAGGGAATAGTCTTTACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAATGGGGAGCTTCTGTTATCTTATGGATTTGTTCCAAAGGAGGGCGCTAATCCGAGCGATTCGGTTGAGTTGTCACTGTCACTCAAGAAATCCGATGGGTCCTATAAGGAGAAGTTAGAACTGTTGAAGAAATCTCAGTGTTTTCCTGTAAGGATTACCGGNTGGCCGTTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTCCAAGCATGAGAGGGAAATTTGAAGAGATGGCGGCCGCAGCATCAAATAAAATTACATCCAGGAAGGAATTGAGATATCCTGAAATAGAGGAGCAGGCATTGCAATTCATACTGGATAGCTGTGAATCCAGTATATCAAAATACAACAAGTTCTTACAGGCAAGGAAACACTTTAATAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00173	210804	213234	+

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000173s00011836.1	PF00856.23	SET	99	145	1.60E-11
Glyur000173s00011836.1	PF09273.6	Rubis-subs-bind	178	270	1.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.699
SRR1783600	control	1.705
SRR1783602	moderate drought stress	2.187
SRR1811619	moderate drought stress	2.252

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.877
DRR006520	Root Summer glycyrrhizin high producing strain	3.757
DRR006521	Root Winter glycyrrhizin high producing strain	5.631
DRR006522	Root Winter glycyrrhizin high producing strain	5.907
DRR006523	Root Summer glycyrrhizin low producing strain	2.005
DRR006524	Root Summer glycyrrhizin low producing strain	2.065
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.489
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.388

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.249
SRR2868004	Drought Stress (root)	4.895
SRR2967015	Control (root)	5.977

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.556
SRR9715740	Leaf	55.199
SRR9715741	Leaf	32.516
SRR9715739	Root	0.620
SRR9715742	Root	2.166
SRR9715743	Root	2.253

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.488
SRR8749028	MeJA induced 9h	6.185
SRR8749029	MeJA induced 9h	2.452
SRR8749030	Uninduced	2.382
SRR8749031	Uninduced	0.708
SRR8749032	Uninduced	1.144

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.092
SRR8400027	Control - Root	5.608