Gene detail

Gene detail information of Glyur000173s00011831.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48250.1	4.00E-111	B-box type zinc finger protein with CCT domain
NR	KHN08332.1	0	Zinc finger protein CONSTANS-LIKE 9 [Glycine soja]
Swissprot	tr\|Q9LUA9\|COL10_ARATH	6.00E-148	Zinc finger protein CONSTANS-LIKE 10
trEMBL	tr\|K7N1D6\|K7N1D6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G07051.2}

Sequence

Transcript Sequence

>Glyur000173s00011831.1
CAAACACCATTTCTTTGCTTTGCTTTTGTATTATTATTCTTCTCTTCTCTCCCTCTTCTAAATATCTCCCAATCTATTCTCTCTTATCTATTTATCACAGCTTCTGTCTGAACTGAACTCAAATAGCAGAACAGAAGAGAGAGAATCACAAAAAAAGTGGAACACATAGAGAGAGTGGTCACTGTGTCTGTTCTTCTCTTGAAAAGTTCAGCTGCTGCTTCTGGGGTTCTTTCTTTGCTTTCGGGTTAAAAAATATGAGTTTTTTCTGAAAAAGCAAAGCCCTTTTGCTTACTGATCTTGTCTTCTTCTCTGTCTTCCTTGCCGTAAGCTGCTGAATTCACAGTATTGAAATTGTGCTTTCTTTATCACATTGTCTGAAGGCTTCAAAGTTATAGGACAGAATTAGGCTTCAGCATCTTCAAATAAAGAGGGGGAAATCTCTGTTTTATCAGAAGTATCAAGGAGCTAAAACATAATCAGTTTAAAGATGGGTTATATATGTGATTTTTGTGGAGACCAGAGGTCCATGGTGTACTGCCGCTCCGATGCGGCATGCTTGTGCTTGTCATGTGATCGAAATGTTCATTCCGCTAACACCCTTTCAAAACGGCATTCAAGGACCCTTTTATGTGAGAGATGCAATTCACAACCTGCTTTTGTTAGGTGTGCTGAAGAGAAGATCTCACTTTGTCAGAATTGTGATTGGTTGGGTCATGGTAACTCTACATCTTGTTCCAATCATAAGAGGCAAGCAATCAATTGCTACTCCGGCTGCCCTTCAGCGGCGGAACTGTCTTCGATATGGTCATTCGTGTTAGATGTCCCTTCTATGAGTGAATCTACATGTGAGCAAGAACTNGGCTTAATGAGTATTAATGAAAACAAGAGTGGTTGTTTTCCTCCTGAAAACCGGGACGAATCTGGTTCAGATCAAGTTAATGATTTGCCTGGTTTGGGTAAGTCTTTGGTTGGTACATCTTCTATGCCCGAGTCGAGCTCAGAACCTCGTGTTCTGGACCAGCCAGCTGGACCTACCAATGAATGTCTGCCAAAGTTNTACTGTCCTGCTACAAAATGCCCTGAACTATCTGAAGATGATAGTCTGTATGGCGATTTCAACATGGATGAAATGGATATAAATATTGAGAACTATGAAGAACTTTTTGGTATGGCCCTCAGTCATTCTGAAGAGCTTTTTGAAAATGGNGGATTTAATAGCTTATTTGGGACAAAGGACATGTCTGCTGGAGATTCCAATTGTCAGGATGCTGTTGCTGCTGAGGTTTCATCAGTTGGACCGGGCAATGCAATGCCAGCATGCAGCAATCCAGCATCTGCAGATTCCATACTGAGTACTAAAACCGATTCAATTCTTTGTTTTACGGGAAGGCAAGCCCAATCAAACCTTTCCTTTTCTGGCATTACCGGAGAGAGCAATGCTGGAGAGTATCAAGATTGTGGGGCTTCTTCANTGCTTATCATGGGAGAACCTCCTTGGTTAAAGCCTTGTCCTGAAAATAACCTACAATCTGCTAACCGCAGTGACGCTGTTATGCGATATAAGGAAAAGAAGAAATCGCGCAAGTTTGACAGAAGAGTGAGGTATGCCTCTCGCAAGGCAAGGGCCGATGTCAGAAGGCGCGTGAAGGGCCGGTTTGTCAAAGCCGGTGATGCCTACGATTATGACCCTTTGAGCGAAACCAGAAGCTTCTGAGTGGGCATAGCTTTCTTTCAAGGAGGGAAAAAAGGGTCTAAGAAGGCGCGNACTGTGTTCAACGGTATAAACTCAAGACCTGATTCTCTGTCCTTCACTGCCAAGGGTATCCTACTTGTATTGGGCAATGTGTTTGGATTGCCTTTTTGTTACACTTGGCAAATTCTGCTTAAATTCTTCTCCAAGAATCCAAAAGTACTCTTCTAGGATCCTTTTTTCGGCCTAAACCATGCTCCATGTTTGTCATGTTGGTGATTATGTAAAACTCAACTNTGCTGCTATAGTCATGTCTAGAAGTGCCTGAGAGAAGTCATGATAAGTGGCTCAATTTGACAGTTCCAGATAAAAACTACAACACTACACAGTTGTATATTGTAATATTTGGCNTATTTGCTTTTGACATGTATAGCACACAAGCTACATACATGTATGCAGTTTAGATGTATAAAATGCACAATGGTTCTGACATCAGACCAATGTAAATTCAATGGTGTATGTATAGAACNGGATACCATGTATGCTGATGATAACGGTCTATATTGGAAATGTGCCAAAAGTTTTGTTTGTGATTTGAGTATTTTATTTGGGTGTTGTTGATGCACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00173	172420	176482	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000173s00011831.1	PF06203.9	CCT	351	394	3.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.113
SRR1783600	control	1.119
SRR1783602	moderate drought stress	1.261
SRR1811619	moderate drought stress	1.229

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	45.859
DRR006520	Root Summer glycyrrhizin high producing strain	45.296
DRR006521	Root Winter glycyrrhizin high producing strain	19.868
DRR006522	Root Winter glycyrrhizin high producing strain	20.050
DRR006523	Root Summer glycyrrhizin low producing strain	54.139
DRR006524	Root Summer glycyrrhizin low producing strain	55.089
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.788
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.822

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.246
SRR2868004	Drought Stress (root)	2.882
SRR2967015	Control (root)	21.198

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.110
SRR9715740	Leaf	15.870
SRR9715741	Leaf	9.334
SRR9715739	Root	0.205
SRR9715742	Root	1.302
SRR9715743	Root	1.038

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.080
SRR8749028	MeJA induced 9h	30.491
SRR8749029	MeJA induced 9h	23.032
SRR8749030	Uninduced	2.680
SRR8749031	Uninduced	3.567
SRR8749032	Uninduced	9.319

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.923
SRR8400027	Control - Root	17.428