Gene detail information of Glyur000173s00011829 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04240.2 | 3.00E-21 | RING/U-box superfamily protein |
| NR | XP_004502107.1 | 9.35E-44 | PREDICTED: E3 ubiquitin-protein ligase ATL4-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9SI09|XERIC_ARATH | 1.00E-26 | Probable E3 ubiquitin-protein ligase XERICO |
| trEMBL | tr|B7FHG6|B7FHG6_MEDTR | 2.00E-43 | Uncharacterized protein {ECO:0000313|EMBL:AFK47695.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00173 | 161439 | 162043 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.513 |
| SRR1783600 | control | 9.998 |
| SRR1783602 | moderate drought stress | 15.937 |
| SRR1811619 | moderate drought stress | 14.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.584 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.452 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.810 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.897 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.352 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.933 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 203.513 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 201.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.529 |
| SRR2868004 | Drought Stress (root) | 5.704 |
| SRR2967015 | Control (root) | 7.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.628 |
| SRR9715740 | Leaf | 34.732 |
| SRR9715741 | Leaf | 29.186 |
| SRR9715739 | Root | 1.557 |
| SRR9715742 | Root | 3.835 |
| SRR9715743 | Root | 7.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.392 |
| SRR8749028 | MeJA induced 9h | 6.258 |
| SRR8749029 | MeJA induced 9h | 5.551 |
| SRR8749030 | Uninduced | 2.365 |
| SRR8749031 | Uninduced | 2.135 |
| SRR8749032 | Uninduced | 2.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.237 |
| SRR8400027 | Control - Root | 6.637 |