Gene detail information of Glyur000173s00011826 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06170.1 | 3.00E-31 | Serinc-domain containing serine and sphingolipid biosynthesis protein |
| NR | ACJ84561.1 | 5.19E-45 | unknown [Medicago truncatula] |
| trEMBL | tr|B7FII2|B7FII2_MEDTR | 2.00E-45 | Uncharacterized protein {ECO:0000313|EMBL:AFK35204.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00173 | 145697 | 146432 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000173s00011826.1 | PF03348.10 | Serinc | 26 | 116 | 4.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.858 |
| SRR1783600 | control | 2.603 |
| SRR1783602 | moderate drought stress | 1.734 |
| SRR1811619 | moderate drought stress | 2.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.203 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.380 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.637 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.814 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.597 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.519 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.397 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.998 |
| SRR2868004 | Drought Stress (root) | 0.670 |
| SRR2967015 | Control (root) | 0.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.074 |
| SRR9715740 | Leaf | 1.716 |
| SRR9715741 | Leaf | 0.908 |
| SRR9715739 | Root | 0.037 |
| SRR9715742 | Root | 0.398 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.319 |
| SRR8749028 | MeJA induced 9h | 0.051 |
| SRR8749029 | MeJA induced 9h | 0.138 |
| SRR8749030 | Uninduced | 0.097 |
| SRR8749031 | Uninduced | 0.632 |
| SRR8749032 | Uninduced | 1.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.489 |
| SRR8400027 | Control - Root | 0.668 |