Gene detail information of Glyur000173s00011825.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65610.1 | 0 | Six-hairpin glycosidases superfamily protein |
| NR | KHN09941.1 | 0 | Endoglucanase 7 [Glycine soja] |
| COG | YP_007159459.1 | 8.00E-65 | Cellulase [Anabaena cylindrica PCC 7122] |
| Swissprot | tr|O04478|GUN7_ARATH | 0 | Endoglucanase 7 |
| trEMBL | tr|I1NDU7|I1NDU7_SOYBN | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00173 | 137397 | 142814 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000173s00011825.1 | PF00759.14 | Glyco_hydro_9 | 113 | 585 | 3.20E-128 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.203 |
| SRR1783600 | control | 0.203 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.109 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.108 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.055 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.055 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.811 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.550 |
| SRR2868004 | Drought Stress (root) | 6.964 |
| SRR2967015 | Control (root) | 5.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.597 |
| SRR9715740 | Leaf | 6.922 |
| SRR9715741 | Leaf | 11.029 |
| SRR9715739 | Root | 0.011 |
| SRR9715742 | Root | 0.067 |
| SRR9715743 | Root | 0.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.861 |
| SRR8749028 | MeJA induced 9h | 23.239 |
| SRR8749029 | MeJA induced 9h | 16.227 |
| SRR8749030 | Uninduced | 18.079 |
| SRR8749031 | Uninduced | 23.434 |
| SRR8749032 | Uninduced | 12.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.488 |
| SRR8400027 | Control - Root | 1.573 |