Gene detail information of Glyur000173s00011822 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G27390.1 | 3.00E-46 | |
| NR | XP_003601502.1 | 7.02E-103 | Membrane protein, putative [Medicago truncatula] |
| Swissprot | tr|Q8GUM4|Y3739_ARATH | 7.00E-70 | Uncharacterized membrane protein At3g27390 |
| trEMBL | tr|A0A068V796|A0A068V796_COFCA | 4.00E-98 | Coffea canephora DH200=94 genomic scaffold, scaffold_105 {ECO:0000313|EMBL:CDP15743.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00173 | 129708 | 133426 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.058 |
| SRR1783600 | control | 0.066 |
| SRR1783602 | moderate drought stress | 0.363 |
| SRR1811619 | moderate drought stress | 0.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.919 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.909 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.581 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.403 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.979 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.148 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.328 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.256 |
| SRR2868004 | Drought Stress (root) | 0.873 |
| SRR2967015 | Control (root) | 0.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.193 |
| SRR9715740 | Leaf | 0.167 |
| SRR9715741 | Leaf | 0.596 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.605 |
| SRR9715743 | Root | 0.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.219 |
| SRR8749028 | MeJA induced 9h | 0.051 |
| SRR8749029 | MeJA induced 9h | 0.066 |
| SRR8749030 | Uninduced | 0.254 |
| SRR8749031 | Uninduced | 0.114 |
| SRR8749032 | Uninduced | 0.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.191 |
| SRR8400027 | Control - Root | 1.444 |