Gene detail information of Glyur000173s00011814 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38495.1 | 2.00E-39 | |
| NR | XP_006422545.1 | 4.93E-77 | hypothetical protein CICLE_v10029589mg [Citrus clementina] |
| trEMBL | tr|A0A067FL65|A0A067FL65_CITSI | 2.00E-77 | Uncharacterized protein {ECO:0000313|EMBL:KDO68144.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00173 | 65921 | 70580 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000173s00011814.1 | PF08265.6 | YL1_C | 104 | 127 | 7.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.180 |
| SRR1783600 | control | 24.883 |
| SRR1783602 | moderate drought stress | 20.629 |
| SRR1811619 | moderate drought stress | 20.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.240 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.824 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.661 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.099 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.769 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.665 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.020 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.406 |
| SRR2868004 | Drought Stress (root) | 31.562 |
| SRR2967015 | Control (root) | 30.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.860 |
| SRR9715740 | Leaf | 26.328 |
| SRR9715741 | Leaf | 28.775 |
| SRR9715739 | Root | 22.513 |
| SRR9715742 | Root | 23.194 |
| SRR9715743 | Root | 23.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.621 |
| SRR8749028 | MeJA induced 9h | 15.877 |
| SRR8749029 | MeJA induced 9h | 20.002 |
| SRR8749030 | Uninduced | 16.779 |
| SRR8749031 | Uninduced | 9.227 |
| SRR8749032 | Uninduced | 14.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 62.610 |
| SRR8400027 | Control - Root | 67.351 |