Gene detail information of Glyur000173s00011805 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_002885484.1 | 3.97E-26 | predicted protein [Arabidopsis lyrata subsp. lyrata] |
| COG | YP_007067976.1 | 6.00E-06 | hypothetical protein Cal7507_4787 [Calothrix sp. PCC 7507] |
| Swissprot | tr|Q40375|PRP2_MEDTR | 1.00E-08 | Repetitive proline-rich cell wall protein 2 (Precursor) |
| trEMBL | tr|D7L1K8|D7L1K8_ARALL | 1.00E-26 | Predicted protein {ECO:0000313|EMBL:EFH61743.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00173 | 14761 | 16349 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4231.014 |
| SRR1783600 | control | 4247.457 |
| SRR1783602 | moderate drought stress | 2148.148 |
| SRR1811619 | moderate drought stress | 2083.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1186.723 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1148.445 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1086.221 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1049.441 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 618.440 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 576.756 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.804 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 339.855 |
| SRR2868004 | Drought Stress (root) | 197.207 |
| SRR2967015 | Control (root) | 257.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.206 |
| SRR9715740 | Leaf | 5.666 |
| SRR9715741 | Leaf | 31.121 |
| SRR9715739 | Root | 1531.802 |
| SRR9715742 | Root | 1377.576 |
| SRR9715743 | Root | 1330.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 69.424 |
| SRR8749028 | MeJA induced 9h | 14.984 |
| SRR8749029 | MeJA induced 9h | 87.374 |
| SRR8749030 | Uninduced | 2.565 |
| SRR8749031 | Uninduced | 10.541 |
| SRR8749032 | Uninduced | 17.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 936.147 |
| SRR8400027 | Control - Root | 1013.677 |