Gene detail information of Glyur000173s00011803 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22142.1 | 9.00E-40 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | XP_004304516.1 | 7.18E-47 | PREDICTED: uncharacterized protein LOC101314010 [Fragaria vesca subsp. vesca] |
| Swissprot | tr|Q00451|PRF1_SOLLC | 2.00E-33 | 36.4 kDa proline-rich protein |
| trEMBL | tr|U5G8U1|U5G8U1_POPTR | 4.00E-45 | Uncharacterized protein {ECO:0000313|EMBL:ERP58674.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00173 | 6911 | 7585 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000173s00011803.1 | PF14547.1 | Hydrophob_seed | 139 | 222 | 2.20E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2472.755 |
| SRR1783600 | control | 2401.434 |
| SRR1783602 | moderate drought stress | 1671.553 |
| SRR1811619 | moderate drought stress | 1654.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 148.198 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 140.774 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9540.114 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9393.954 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.976 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.058 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.961 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.031 |
| SRR2868004 | Drought Stress (root) | 0.110 |
| SRR2967015 | Control (root) | 0.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.739 |
| SRR9715740 | Leaf | 0.739 |
| SRR9715741 | Leaf | 1.420 |
| SRR9715739 | Root | 371.509 |
| SRR9715742 | Root | 824.284 |
| SRR9715743 | Root | 719.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.045 |
| SRR8749029 | MeJA induced 9h | 0.042 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 454.449 |
| SRR8400027 | Control - Root | 817.730 |