Gene detail

Gene detail information of Glyur000172s00014918

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G59890.1	1.00E-119	Dihydrodipicolinate reductase, bacterial/plant
NR	XP_004510719.1	0	PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic-like isoform X2 [Cicer arietinum]
COG	YP_003251048.1	3.00E-75	dihydrodipicolinate reductase [Fibrobacter succinogenes subsp. succinogenes S85]
Swissprot	tr\|Q8LB01\|DAPB2_ARATH	2.00E-148	4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic (Precursor)
trEMBL	tr\|I3S7Y0\|I3S7Y0_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK36372.1}

Sequence

Transcript Sequence

>Glyur000172s00014918.1
TCGACTTCCCTCAACAANGGCGAATAATGGAAAAGAGATGATTACCTTAAACCCTGAAACCCTGTGACTGTAAACCTATCCATCTCGAAACGGTTCGCCAAACCCTAAAGCAACCAACTTGAACTCACTTTCTCACTCTCAGACTTTGATGGCAACGTTCACGCTGAAAACCGCAACCAATGTGCTCCACAGACACCAAAATCACCTCGCCTTCTTCTCCAATGGTGNCAGTGCAAGGAGCAGTGTCCCCATCTCGCAGAAGAGGAGATCGCCTCGTTCGTTCACCACGGTGTCAATGGCAGCAGCAACACCGGTTCAGACTTTTCTTGAAAAGTCTGCTCCTACGCCCCCGAACACTGGCCTTCCAATAATGGTTAATGCATGTACTGGAAAAATGGGAAAGGCTGTCATTAATGCAGCGGAAGCTGCCGGACTGCATGTTGTTCCTGTGTCATTTGGGATTGAAGAGGAGTCTGGGAAGACTCTCCAGGTCTGTGGAAAGGAGTTTCTTGTGCATGGTCCTTCTGATAGGGAGAGTGTTCTTTTATCTGTCCTTGATAAATATCCAAATTTGATTGTTGTGGACTACACAGCACCAGCCGCAGTCAATGGCAATGCGGAGTTATACAGTAAGGTCGGGGTACCCTTTGTGATGGGGACCACTGGTGGAGATAGGGACTTGTTGCATAAGACCNTTGAAGATTCAAAGATTTATGCTGTGATATCCCCACAAATGGGAAAGCAGGTATTGGAGTCTCATCAAGCAGGCAAAGCTGATGCATCTGGAACCGCAAAGGCTGTAATATCTTGCTTCAACAAACTTGGTGTCTCCTTTGATATGAATCAGATACAATTGATCAGAGATCCCAAGCAACAACTTGAAATGGTGGGAGTCCCAGAGGACCATTTGTCGGGTCACGCGTTTCATATGTATCATTTGACATCACCAGATGAAACAGTTTCATTTGAATTCCAGCATAATGTTTGTGGTAGATCAATATATGCTGAGGGCACTGTTGATGCTGTTCTTTTCCTTGCTAAGAAGATTGAAGCAAAGGATCCCAAGAGAGTGTACAATATGATTGATGTCTTGCGAGAGGGTAATATGCGATAAAATTTTCGTGGGAGTCTGATGCAAAGATGCCAGCTTTGGAACTTGCTTAACGAGATTTGGCATTCTGATAAAGCAATTTTCATCTTCTGTTGTTGTTTAGGATGAGTTGAGTTAGTGAGAGCGCACAATACTATGTACTACTATTGTGAATCGTCCAAAACCATATAAGCGATTAGTTTTTTGGGGATCAGTTTCAACATTTTTGCTGTTTCAAATAACTTTTATTAATCATGTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00172	266185	270013	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00215	dapB	EC:1.17.1.8	Biosynthesis of amino acids	map01230
			Lysine biosynthesis	map00300
			Monobactam biosynthesis	map00261

Gene Ontology

biological_process

GO:0009089 lysine biosynthetic process via diaminopimelate

GO:0055114 oxidation-reduction process

molecular_function
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000172s00014918.1	PF01113.15	DapB_N	73	196	9.00E-15
Glyur000172s00014918.1	PF05173.9	DapB_C	191	315	5.90E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.957
SRR1783600	control	47.526
SRR1783602	moderate drought stress	27.714
SRR1811619	moderate drought stress	27.901

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.534
DRR006520	Root Summer glycyrrhizin high producing strain	51.005
DRR006521	Root Winter glycyrrhizin high producing strain	17.745
DRR006522	Root Winter glycyrrhizin high producing strain	17.351
DRR006523	Root Summer glycyrrhizin low producing strain	32.136
DRR006524	Root Summer glycyrrhizin low producing strain	32.672
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.011
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.861

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.824
SRR2868004	Drought Stress (root)	19.862
SRR2967015	Control (root)	20.698

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.713
SRR9715740	Leaf	16.221
SRR9715741	Leaf	9.935
SRR9715739	Root	15.363
SRR9715742	Root	19.971
SRR9715743	Root	17.694

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.139
SRR8749028	MeJA induced 9h	14.249
SRR8749029	MeJA induced 9h	18.057
SRR8749030	Uninduced	2.571
SRR8749031	Uninduced	0.913
SRR8749032	Uninduced	1.493

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.089
SRR8400027	Control - Root	42.739