Gene detail

Gene detail information of Glyur000172s00014917

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46270.1	2.00E-46	G-box binding factor 3
NR	BAD42432.1	5.73E-174	bZip transcription factor [Psophocarpus tetragonolobus]
Swissprot	tr\|Q99089\|CPRF1_PETCR	4.00E-99	Common plant regulatory factor 1
trEMBL	tr\|Q68AN1\|Q68AN1_PSOTE	2.00E-174	BZip transcription factor {ECO:0000313\|EMBL:BAD42432.1}

Sequence

Transcript Sequence

>Glyur000172s00014917.1
CTCCAAGCAAAGCTCTTTCCCTCGTTTTTTTTAAGGGAGAGAAAGTAGAGAGAGGGGATTTGCAGAATTTGGTTTTTCCCCCAAACCTTAATTTGAGGATAGTTCGAAGCTCCGAGGATTGGTTATTGTTTCTTCCTTCCTTTTTTTTCCATCAAAGGGGATTTTGATTTCGGTTATTTTTTTTCCTCTTCAGAGTGTTGGGGTATTCTGTGAGTTGAATAATTTGTCTCCGGAAGTATTTGACTCAGTCTCAGTGCTTTTCCTTTTGGTGCTTACCTCATGGGAAACAGTGAGGATGGGAAATCCGTTAAGANTGAAAAGCCTTCTTCACCTGTAACAACTGATCAGACCAATCAAGCCAACCAACCTAACATTCATGTCTATCCTGATTGGGCTACCATGCAGGCATATTATGGGCCAAGAGTTGGCGTTCCACCATACTACAACTCAGCTGTTGCTTCTGGTCACGCTCCTCACCCGTACATGTGGGGGCCACCACAGATGGCAGGGATGAATAATTTGCCATCTTATTGTTTCTTCCAGCCTATGATGCCACCATATGGGCCGCCTTATGCAGCATTTTATTCACATGGAGGGGTTTATACTCACCCCGCAGTTGCCATCGGGCCTAATTCACATGGTCAAGGAATTCCATCTTCACCTGCTGCTGGGACTCCTTCAAGCATAGAGANGCCAACCAAATCATCTGGAAACACTGATCAGGGGTTAATGAAGAAACTGAAAGGATTTGATGGGCTTGCGATGTCAATTGGCAATTGCAATGCTGAGAGTGCTGAGCATGGAGCTGAAAACAGGCTATCACAGAGTGTGGATACTGAGGGTTCCAGTGATGGAAGTGATGGCAACACTTCNGGGGCTAATCAAACAAGGAAAAGAAGCCGCGAAGGAACACCAACCACTGATGGAGAAAGGAAATCTGAGATACAAAATAGTCCAGTAACTCCANTTTCCAAAGAGACTGCAGCATCCAAAAAGATGGTGTCAGTTCCCCCAGCCAATGTTGCAGGAAAACTAGTTGGACCTGTAGTTTCTTCAGGTATGACCACAGCACTGGAGCTGAGGAACCCTTCGACTGTTCATCCTATGACATGTCCCACTAGTGCTCCACAACCTTGTGGAGTTTTGCCTGCTGAAGCTTGGGTACAGAATGAGCGTGAGCTGAAACGTGAGAGGAGGAAACAATCAAACCGTGAATCTGCTAGAAGGTCCAGGCTGAGGAAGCAGGTACAAATTGTTGCCAATTTTGTTTCGTAGACTCGCGTTTCTTCAGTTTTATGATAAAACACATAAATTGTTGAGTTTCTTTACTGTCACGTACTTTTTTTCCTTCTTCATTTGTTGCATGGGTGCATGTACGTAAAAGGGTTTGTTCTTACAAAAGGAAAGCTCATGAGCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGTTTGTTAGGACCATAAACTCTGTATTCTATTTAGATTTGACAGAAATGGGTGAGAACTTTTAAAAAGTTTGTAAATTGAAGAGAATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00172	258959	263513	+

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000172s00014917.1	PF07777.6	MFMR	1	200	4.00E-63
Glyur000172s00014917.1	PF00170.16	bZIP_1	298	324	1.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.462
SRR1783600	control	8.636
SRR1783602	moderate drought stress	11.011
SRR1811619	moderate drought stress	10.878

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.436
DRR006520	Root Summer glycyrrhizin high producing strain	28.409
DRR006521	Root Winter glycyrrhizin high producing strain	16.209
DRR006522	Root Winter glycyrrhizin high producing strain	16.009
DRR006523	Root Summer glycyrrhizin low producing strain	100.405
DRR006524	Root Summer glycyrrhizin low producing strain	103.073
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.405
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.509

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.846
SRR2868004	Drought Stress (root)	22.445
SRR2967015	Control (root)	26.583

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.930
SRR9715740	Leaf	8.079
SRR9715741	Leaf	11.329
SRR9715739	Root	10.836
SRR9715742	Root	37.998
SRR9715743	Root	33.986

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.465
SRR8749028	MeJA induced 9h	73.152
SRR8749029	MeJA induced 9h	33.041
SRR8749030	Uninduced	25.466
SRR8749031	Uninduced	17.430
SRR8749032	Uninduced	10.477

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.509
SRR8400027	Control - Root	21.437