Gene detail information of Glyur000172s00014913 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01150.1 | 6.00E-55 | |
| NR | AFK38414.1 | 4.81E-88 | unknown [Lotus japonicus] |
| COG | YP_007118737.1 | 3.00E-10 | glutamyl-tRNA synthetase [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|O04616|CUT1A_ARATH | 9.00E-69 | Protein CURVATURE THYLAKOID 1A, chloroplastic (Precursor) |
| trEMBL | tr|I3SDS2|I3SDS2_LOTJA | 2.00E-88 | Uncharacterized protein {ECO:0000313|EMBL:AFK38414.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00172 | 238468 | 245512 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000172s00014913.1 | PF14159.1 | CAAD | 90 | 168 | 3.80E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.593 |
| SRR1783600 | control | 4.469 |
| SRR1783602 | moderate drought stress | 5.107 |
| SRR1811619 | moderate drought stress | 5.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.982 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.780 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.870 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.541 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.835 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.733 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 338.214 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 335.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.225 |
| SRR2868004 | Drought Stress (root) | 57.993 |
| SRR2967015 | Control (root) | 59.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 316.730 |
| SRR9715740 | Leaf | 304.001 |
| SRR9715741 | Leaf | 264.168 |
| SRR9715739 | Root | 11.645 |
| SRR9715742 | Root | 10.521 |
| SRR9715743 | Root | 10.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.212 |
| SRR8749028 | MeJA induced 9h | 30.417 |
| SRR8749029 | MeJA induced 9h | 28.035 |
| SRR8749030 | Uninduced | 41.577 |
| SRR8749031 | Uninduced | 41.519 |
| SRR8749032 | Uninduced | 36.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.118 |
| SRR8400027 | Control - Root | 22.141 |