Gene detail information of Glyur000172s00014910 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04520.1 | 3.00E-56 | Nucleic acid-binding, OB-fold-like protein |
| NR | AFK39830.1 | 3.74E-98 | unknown [Lotus japonicus] |
| COG | YP_004035139.1 | 3.00E-16 | translation initiation factor 1a (aeif-1a) [Halogeometricum borinquense DSM 11551] |
| Swissprot | tr|P56331|IF1A_ONOVI | 3.00E-93 | Eukaryotic translation initiation factor 1A |
| trEMBL | tr|I3SHT8|I3SHT8_LOTJA | 1.00E-98 | Uncharacterized protein {ECO:0000313|EMBL:AFK39830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00172 | 231987 | 232424 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000172s00014910.1 | PF01176.14 | eIF-1a | 30 | 94 | 8.20E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 113.591 |
| SRR1783600 | control | 109.968 |
| SRR1783602 | moderate drought stress | 124.546 |
| SRR1811619 | moderate drought stress | 116.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 254.706 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 250.544 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 248.925 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 239.107 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 186.498 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 170.662 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 166.025 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 169.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 122.698 |
| SRR2868004 | Drought Stress (root) | 104.645 |
| SRR2967015 | Control (root) | 94.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 365.066 |
| SRR9715740 | Leaf | 424.588 |
| SRR9715741 | Leaf | 291.592 |
| SRR9715739 | Root | 159.580 |
| SRR9715742 | Root | 272.640 |
| SRR9715743 | Root | 249.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 103.467 |
| SRR8749028 | MeJA induced 9h | 99.123 |
| SRR8749029 | MeJA induced 9h | 94.192 |
| SRR8749030 | Uninduced | 93.395 |
| SRR8749031 | Uninduced | 51.800 |
| SRR8749032 | Uninduced | 131.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 339.190 |
| SRR8400027 | Control - Root | 355.411 |