Gene detail

Gene detail information of Glyur000172s00014899.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24090.1	2.00E-89	chitinase A
NR	XP_006584176.1	9.16E-153	PREDICTED: acidic endochitinase-like [Glycine max]
Swissprot	tr\|P29060\|CHIA_TOBAC	8.00E-125	Acidic endochitinase (Precursor)
trEMBL	tr\|I1KI15\|I1KI15_SOYBN	9.00E-153	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G06760.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000172s00014899.1
ATGGAGCGAGACTGGGCCAATTTAGAAGCGCTACCACTCAGCTTGGTTCTTAACAAATTGGAGGAACAAATAGACCACGTTTGGTTCGGTGCGAATTGGCGAACAATTTCAAAGCTTAAGCATCAAAGCCAACCATTCTGGACTTATGTTGTATTGCCTATGCTAATGATCCCCGCAACAGGAAAAAGCAGGACAGAGTCGACAAGTTTGTATACATATAGCTCTCTATCCCAGAGTCTGTGCCCCATTCAGTTACCCATAATTTCTTACAATAGAAGGTACTGTTGTGGCACTAGCCATGGATGGGTTGCAACTATTGATGATGCTAACAATGTCATAACTTTGTTGAATCCTTTTAAGAACGTAGCTCCCATTAGTCTTCCACCCNTCAATCATGAATGCAACATCCGCAAGGTTACTCTGTCTGCNNACCCTATAAAAAGTCCAAACGATTACGTGGTTGTAGCAATTTACAGCANGCGTTGTTGTCTTGCTTTCATAAGAGCAGGCCAAATATTTTGGACTTACCTAAACACCGACGATGCTCATTTCATTGATGTTGTATTCTATAATGGTCTAGTTTATGCTGTGACTCGACGGGATGATATTAGATCTTTCAGTTATCATTGTTATTCGGATGACCCTTCTGGCAATGANAAGATAACTCCCGAAGTAGTTTTACCTGGAGGCGGNTTCTTTGAAACTTCTTCTCAACGGGCTTATCTCGTGAAGTCCTTAGAGGGAGACTTATGGATGGTGAGAAGACTTTTGGCTTTTNGCAGTAAAGGTCATAGCAAAGGTACTACTGAAGGTTTCCAAGTGTACANACTGGAACTCGATGGCCAGATTGGTAAGCTTCGACCAATGTTGAAACTCGAGAGTTTGGGCGATAATGTTCTGTTTCTTGGAGGGTTCAGCAATTCAATTTCTATGTCATATTCTTGTTTTTCAAGTTGGCTGCAAAAGGATTCAATCTATTATGCTGATGATTTTGATGACTACTACTCACGGGTTCCTCTTGCTTATGGTGAATTTGATCTAGGGATCTACAATGTGAAAGATGGAAGTTTTGTCTCATTGTCACTACTCAGCCTCATGCTTAGTGTCCTGCTACACACCTCACATGCAGGAAGTGTAGCTGTTTACTGGGGTCAGAACAAAGATGAGGGTACCTTGGCCGAAGCCTGCAATTCAGGAAATTATAAATTTGTGATTATAGGTTTCCTTGCCACATTTGGCAACAACCAAACCCCACTTCTAAACTTAGCTGGCCATTGTGACCCAAACAGCAATGGATGCACTTCTTTGAGTGCTGACATTAACAATTGCAAGAGCAATGGAATTAAGGTGATGCTGTCATTAGGTGGTGGAGCTGGTAGCTATTACCTTTCCTCTGCTGATGAGGCAAGGCAAGGAGGAACAACCCAATATTGGGACGAATTAGTGAAGGCATTAGCAGGGTATAATAGCCAACAGAGTAATAAAGTGTACTTAAGTGCAGCTCCACAATGTCCCTTCCCTGATGCCTGGCTGAAATCTGCTATAGAAACTGGCCTCTTTGATTTCGTTTGGGTACAGTTCTACAACAATTCCCCATGTCAATACTCTGGTAATGCCGACAACCTTAAGAACTATTGGTCACAGTGGACATCAATTCAGGCTGGTCAAGTTTTCTTGGGCCTCCCAGCATCGGAAGATGCAGCTAAGAGTGGCTTTATTAAACCAGATGTCCTTATTTCTGAGGTGCTACCAGCAATTAAGGGCTCCCCAAAATATGGGGGTGTTATGCTTTGGTCTAGGTACTATGACCATGGTTATAGCTCAGCTATTAAGTCCAGCCGAGACTGGGCCAATTTAGAAGCGCTACCACTCAGCTTGGTTCTTGACAAATTGGAAGAACCAATAGACCACGTTTGGTTTGGTGCGGTGTGCAAGAATTGGCGATCGCAATTGTGGGTTGGTGTGGTGTGCAAGAATTGGCAATCAATTGCAAAGCTTAAGCATCAAAGCCAACAATTCAGGACTCATCATGTATTGCCTATGCTAATGATCCCCACAAAAGGAAAAAGCAGTACAGAGACAAGTTTGTATATTCCATCCCTGGGAGAGGGACTGTACCCCATTCAATTACCCGTAATTCCTTACAATAAAAGGTACTATTGTGGCACTAACCATGGATGGGTTGCAACTATTGATGATGCTAACAATGTCATAACTTTGTTGAATCCTTTTAAGAACGTAGTTCCCATTAGTCTTCCACCCCTCAATCATGAATGCAACATCCGCAAGGTTACTCTGTCTGCTGACCCTATAAAAAGTCCAAACGATTACGTGGTTGTAGCAATTTACAGCAAGCGTTGTTGTCTTGCTTTCATAAGAGCAGGCCAAATATTTTGGACTTACATAAACACCGACGATGCTCATTTCATTGATGTTGTATTCTATAATGGTCTAGTTTATGCTGTGACTCGACGGGATGATATTAGATCTTTCAGTTATCATTGTTATTCGGATGACCCTTCTGGCAATGAAAAGATAACTCCCGAAGTAGTTTTACCTGGAGGCGGNTTCTTTGAAACTTCTTCTCAACGGGCTTATCTCGTGAAGTCCTTAGAGGGAGACTTATGGATGGTGAGAAGACTTTTGGCTTTTCGCAGTAAAGGTCATAGCAAAGGTACTACTGAAGGTTTCCAAGTGTACAGACTGGAACTCGATGGCCAGATTGGTAAGCTTCGACCAATGTTGAAACTCGAGAGTTTGGGCGATAATGTTCTGTTTCTTGGAGGGTTCAGCAATTCAATTTCTATGTCATATTCTTGTTTTTCAAGTTGGCTGCAAAAGGATTCAATCTATTATGCTGATGATTTTGATGACTACTACTCACGGGTTCCATTTGCTTATGGTGAATTTGATCTAGGGATCTACAATGTGAAAGATGGAAGTTTTGTTCTAGCCCCATTAGCCCTTGTCTTCATTGTGTTCACAACAGCTCTGTTTGATGCTTCTCGTGCGGGTGTCATTTCTATTTACTGGGGCCAGAATGGAGCAGAGGGTAGTTTGGTTGATGCATGCAACACTGGCAATTATGCCATTGTGAACATAGCTTTCCTATCCTCATTTGGCAATGGAAACAACAATCCAAAGCTCAATCTTGCTGGCCATTGTGATGCATCATCCAATAATGGGTGCAGTTCTCTTAGCACTCAGATTAAAACCTGCCAGAGTCAAAGCATCAAGGTGATGCTTTCCATTGGAGGAAGTGAAGGGAACCATGACCTTTCTTCAGCTGATGAAGCCAGGCAAATATTTTCACATTATCAAATTTACTTATGGAACAACTTTCTTGGGGGCCAATCAAACACACGCCCTCTAGGGGATGCAATTTTGGATGGGATTGACTTTGCTATAGTGTCAGGGTCAACACAGCACTGGGATGAGCTTGCCAAGGCAATATCAGAGTATGGCAAACAGAGGAAGATATATCTAAGTGCAGCACCCCAGTGTCCCATCCCAGACAAGTGGCTAAGCAGTGCTATAGAAACTGGTCTTTTTGACTATGTTTGGGTCCAATTCTATAACAACCCTCCATGTCAATACAATGGGAATGCAAACAATCTCAAGAGCTATTGGAATAGGTGGACAGGAAGTGGGTCTGGTCAAGTTTTCTTGGGGCTGCCAGCAGCAGCAGCAGCAGCTGGGAGTGGGTATATTCCTCCTGAAGTGCTTAATTCTCAAGTGCTACCTTCCATTAAGAGCTCTCCTAGGTATGGGGGTGTTATGCTTTGGTCTAAGTTCTACGATCAAGGGTATAGTTCAGCTATTAAGGCACAAGTGTAA

Protein Sequence

>Glyur000172s00014899.1
MERDWANLEALPLSLVLNKLEEQIDHVWFGANWRTISKLKHQSQPFWTYVVLPMLMIPATGKSRTESTSLYTYSSLSQSLCPIQLPIISYNRRYCCGTSHGWVATIDDANNVITLLNPFKNVAPISLPPXNHECNIRKVTLSAXPIKSPNDYVVVAIYSXRCCLAFIRAGQIFWTYLNTDDAHFIDVVFYNGLVYAVTRRDDIRSFSYHCYSDDPSGNXKITPEVVLPGGGFFETSSQRAYLVKSLEGDLWMVRRLLAFXSKGHSKGTTEGFQVYXLELDGQIGKLRPMLKLESLGDNVLFLGGFSNSISMSYSCFSSWLQKDSIYYADDFDDYYSRVPLAYGEFDLGIYNVKDGSFVSLSLLSLMLSVLLHTSHAGSVAVYWGQNKDEGTLAEACNSGNYKFVIIGFLATFGNNQTPLLNLAGHCDPNSNGCTSLSADINNCKSNGIKVMLSLGGGAGSYYLSSADEARQGGTTQYWDELVKALAGYNSQQSNKVYLSAAPQCPFPDAWLKSAIETGLFDFVWVQFYNNSPCQYSGNADNLKNYWSQWTSIQAGQVFLGLPASEDAAKSGFIKPDVLISEVLPAIKGSPKYGGVMLWSRYYDHGYSSAIKSSRDWANLEALPLSLVLDKLEEPIDHVWFGAVCKNWRSQLWVGVVCKNWQSIAKLKHQSQQFRTHHVLPMLMIPTKGKSSTETSLYIPSLGEGLYPIQLPVIPYNKRYYCGTNHGWVATIDDANNVITLLNPFKNVVPISLPPLNHECNIRKVTLSADPIKSPNDYVVVAIYSKRCCLAFIRAGQIFWTYINTDDAHFIDVVFYNGLVYAVTRRDDIRSFSYHCYSDDPSGNEKITPEVVLPGGGFFETSSQRAYLVKSLEGDLWMVRRLLAFRSKGHSKGTTEGFQVYRLELDGQIGKLRPMLKLESLGDNVLFLGGFSNSISMSYSCFSSWLQKDSIYYADDFDDYYSRVPFAYGEFDLGIYNVKDGSFVLAPLALVFIVFTTALFDASRAGVISIYWGQNGAEGSLVDACNTGNYAIVNIAFLSSFGNGNNNPKLNLAGHCDASSNNGCSSLSTQIKTCQSQSIKVMLSIGGSEGNHDLSSADEARQIFSHYQIYLWNNFLGGQSNTRPLGDAILDGIDFAIVSGSTQHWDELAKAISEYGKQRKIYLSAAPQCPIPDKWLSSAIETGLFDYVWVQFYNNPPCQYNGNANNLKSYWNRWTGSGSGQVFLGLPAAAAAAGSGYIPPEVLNSQVLPSIKSSPRYGGVMLWSKFYDQGYSSAIKAQV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00172	142178	153737	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01183	E3.2.1.14	EC:3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000172s00014899.1	PF03478.13	DUF295	291	334	9.90E-09
Glyur000172s00014899.1	PF00704.23	Glyco_hydro_18	379	470	3.10E-13
Glyur000172s00014899.1	PF03478.13	DUF295	916	959	1.00E-08
Glyur000172s00014899.1	PF00704.23	Glyco_hydro_18	1008	1231	9.70E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.493
SRR1783600	control	0.459
SRR1783602	moderate drought stress	0.038
SRR1811619	moderate drought stress	0.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.440
DRR006520	Root Summer glycyrrhizin high producing strain	0.423
DRR006521	Root Winter glycyrrhizin high producing strain	0.042
DRR006522	Root Winter glycyrrhizin high producing strain	0.022
DRR006523	Root Summer glycyrrhizin low producing strain	0.193
DRR006524	Root Summer glycyrrhizin low producing strain	0.174
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.786
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.390

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.219
SRR2868004	Drought Stress (root)	0.183
SRR2967015	Control (root)	0.226

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.456
SRR9715740	Leaf	2.404
SRR9715741	Leaf	8.264
SRR9715739	Root	0.182
SRR9715742	Root	2.282
SRR9715743	Root	1.637

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.088
SRR8749028	MeJA induced 9h	4.515
SRR8749029	MeJA induced 9h	1.782
SRR8749030	Uninduced	3.118
SRR8749031	Uninduced	0.476
SRR8749032	Uninduced	1.714

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.512
SRR8400027	Control - Root	0.951