Gene detail

Gene detail information of Glyur000172s00014897.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01210.1	0	glycosyl transferase family 1 protein
NR	KEH18768.1	0	group 1 family glycosyltransferase [Medicago truncatula]
COG	YP_003641557.1	2.00E-06	group 1 glycosyl transferase [Thermincola potens JR]
trEMBL	tr\|A0A072TPJ6\|A0A072TPJ6_MEDTR	0	Group 1 family glycosyltransferase {ECO:0000313\|EMBL:KEH18768.1}

Sequence

Transcript Sequence

>Glyur000172s00014897.2
GTTTAGCTCACACTGGTCTCTTTTAGCTACGCCTCTTTCCCTTTCCATTTGTTCAACGCCAAATCTTTCTCATTTCTTTCTTTGTTCTCTTTTCAGTAAAAATCAGTGAACAGTTCCTCTCATGCCGTGACCTTCCTCCACAATCAAATCAACCAAATCCACATCATAAACCCCATTTCCACAGTTTCAATCCANCTGCACCCCCCACAATCTTTCTTGGCACTTTTTTTCAATTCGGATACCAAAGTTTGAGTCTTTTTTCAACTTCTTTCACTCTCAGGTGCTCTCTGCTTGAACCCCATCAAAGGGGTTCTTCACATCTAGGCACCCCTGTTTGTTTGCATGTGATTTTTTGGTCAAAATTTGAAGCTTTTTTAGCTCCCAATTAATGGGACTGTAAATGGGTTCTTTGGAATCCTCGATCCCATTGAAGAAAGGGAGCTTGTTTGGTCCTCAATCCAGCAGAAAAGAGAAGCACCCATTTTCACATAGGTTCAGATCGAGCTTCTCCCGTTTGCTCTTTAAGAAACTAGATTACGTTCAATGGATTTGTGCGGTGGTCGTGTTCCTCTGCTTGGTCGTTGTCTTCCAAATGTTCCTGCCGGGTTCGGTGGTGGAAAACTCGGAGAGAGCCGTGAAGATGCGTTACCATCATCTTCATCATCATAAGGACANGTATGCATTGGACATTGGGGAGGAGGCTGTTTTTCTGCCTAGGANTTCGGAGAAGTTCAGGAGAGGTGATGGTAGTAGGGACCTGAATCTGTTGAACCACACGGGGAAAAATTATGGGTACAGAAAGCCTCAGTTGGCACTGGTATTTGGAGAACTGTTGGCTGATTCACAACAATTGCTGATGGTTACAATTGCCGCAGCTTTGTTAGAGATCGGCTACGGAATTCAGGTGTTTTCACTTGAAGATGGACCGGGGCGTAATATGTGGAGAAATTTAAGAGTTCCCATCACTGTTATTCGAACTTGTGACAAGCCAGACAACACTATAGACTGGCTAAACTATGATGGTATCATTGTGAGCTCTCTTGAAGCTAGAGGTGCCTTTTCTTGTTTTTTGCAGGAACCGTTCAAGTCTATAGCTCTTGTATGGATCATTCATGACAGTGCTCTTGGTTATCGGTCAATACAATATACCACTAGTGGGCAGCTTGAACTTTTGAATGATTGGAGAAGAGTTTTCAACCGTTCAACAGTTGTTGTCTTTCCAAACTATGCCTTGCCGATGATTTACTCCACATTTGATTCTGGAAATTTTTATGTCATTCCTGGTTCCCCTGCTGAAGCATTAGAAGCAGATGCATTTATGGCCTTACAGAAAGATAATTTGCGCATCAGCATGGGCTATGGCCCAGAAGATGTGGTTATTGCAATTGTGGGCAGTCAATTTTTGTACAAGGGCATGTGGTTGGGGCATGCCATTGTTTTGCGGGCTTTGTCACCACTTCTAGCAGACTTCCCTTTAAGCAAAGATAATTCCAGTGCACAACTACGGATCATTGTTCATAGTGGGGACTTAACAAATAACTACAGCATGGCTCTTGAGACCATGGCACGGAGCTTGAATTATCCAACAGGTACCATAGAGCATATAGCTGGAGATTTGAATGCAGATTCTGTTCTTAGCACCGCAGATGTTGTGATATATGGATCCTTCCTTGAAGAACAGTCTTTTCCAGAGATTTTGACAAAAGCCATGTGCTTTGAGAAACCAATTATTGCTCCCGATATTTCAATGATCAGAAAATATGTTGATGACAGGGTGAATGGCTATCTTTTCCCTAAGGAAAATATTAAAGTTCTTAGACAAATTATGTTTGAGGTGATCTCAAAAGGGAAGATATCACCNCTGGCTCGGAACATTGCCTCAATAGGAAGAAGAACTGCTAAGAACCTTATGGTTTCAGAAGCAATTGATGGATATGCAACTTTACTTCAGAAAATTCTCAAGCTTCCATCAGAGGTTGCTCCTCCTAAGGCTGTTTCAGAAATACACCCCCATGTTAAAGAACAGTGGCAGTGGCATCTGTTTGAAGCAGTTCCGAATTCAACATATCAAAATGGGGCTTTAAGAAGTAACACATTTTTAGATAAATATGAGGACCGATGGAATCATTCTCAAAAAAATAGATCCACTACTACTGTTGCTGCTAATGATTCATTTGTATACAGCATATGGGAAGAAGAAAAGTATAGTCAGATGGCTATTACCAAAAAAAGGAGAGAGGATGAAGAGTTGAAAGATAGAACAGAGCAGTCACACGGAACATGGGAGGAAGTATATCGAAATGCAAAGAGNGCTGATAGGTCAAAGAATGATTTACATGAAAGGGATGATGGAGAGCTTGAGCGGACAGGACAACCACTATGCATTTATGAACCGTACTTTGGGGAAGGATCTTGGCCTTTTCTACATCAAAGATCTCTGTATCGTGGAGTTTCCCTGTCCGGTAGAGGTAGAAGGCCAGGGAGAGATGATTTCGATGCGCCTTCTCGTCTTCCGCTNCTTAATAACGCTTACTATCGAGATGTACTTGGTGAACATGGAGCCTTCTTTGCGATTGCAAACAGGATTGATCGTCTACACAAAAACGCTTGGATTGGATTTCANTCTTGGAGAGCAACAGCAAGGAAGGCATCTTTGTCCAGAACTGCTGAAAAGGCTTTATTAGATGCTATCCAATCNAAAAGGTATGGGGATGCACTGTATTTCTGGGTGCGCATGGATATGGATCCNCGAAACCATTTGCAGAAGGACTTTTGGTCATTTTGCGATGCCATTAATGCAGGAGGCTGCAAGTTTGCTTTCTCAGAAGCCATGAGGAGAATGTATGGGTTGAAAGACGATACAGAGTTTTTGCCGCCCATGCCTGTAGATGGTGACACTTGGTCTGTCATGCTGAGTTGGGCTCTGCCGACAAGATCCTTTTTAGAGTTTGTGATGTTCTCCAGAATGTTTGTAGATGCATTGGATGCGCAGATGTACGAGGAACACCATTCAACTGGACACTGTCCTTTGAGCTTGTCAAAGGAACAACACAAGTTCAAGAACCGTAGAGGTAAAATGTGGATCAAGTGGTTCTCATACAGCACACTCAAGAGCATGGATGAGGACTTGGCGGAGTTATCGGATTCCGAGGATCCCAATAGGCATTGGTTGTGGCCATCCACCGGCGAAGTCTTCTGGCAAGGCGTGTATGAGAGGGAGAGAAGCTTAAGGCACAAGGAAAAGGAAAAGAGGAAGCAGAAGAGCTTAGAGAAACTGAATAGAATGAGAAAGCGCCACCGCCAACAAGTGATAGGGAAATATGTTAAGCCCCCACCAGAAGAAGAAAGCTCTAACTCATCATCTTTGCTTGCAGAAAACCTTCGTCATTATGAATTCAAAGCATCACAATCCTGA

Protein Sequence

>Glyur000172s00014897.2
MGSLESSIPLKKGSLFGPQSSRKEKHPFSHRFRSSFSRLLFKKLDYVQWICAVVVFLCLVVVFQMFLPGSVVENSERAVKMRYHHLHHHKDXYALDIGEEAVFLPRXSEKFRRGDGSRDLNLLNHTGKNYGYRKPQLALVFGELLADSQQLLMVTIAAALLEIGYGIQVFSLEDGPGRNMWRNLRVPITVIRTCDKPDNTIDWLNYDGIIVSSLEARGAFSCFLQEPFKSIALVWIIHDSALGYRSIQYTTSGQLELLNDWRRVFNRSTVVVFPNYALPMIYSTFDSGNFYVIPGSPAEALEADAFMALQKDNLRISMGYGPEDVVIAIVGSQFLYKGMWLGHAIVLRALSPLLADFPLSKDNSSAQLRIIVHSGDLTNNYSMALETMARSLNYPTGTIEHIAGDLNADSVLSTADVVIYGSFLEEQSFPEILTKAMCFEKPIIAPDISMIRKYVDDRVNGYLFPKENIKVLRQIMFEVISKGKISPLARNIASIGRRTAKNLMVSEAIDGYATLLQKILKLPSEVAPPKAVSEIHPHVKEQWQWHLFEAVPNSTYQNGALRSNTFLDKYEDRWNHSQKNRSTTTVAANDSFVYSIWEEEKYSQMAITKKRREDEELKDRTEQSHGTWEEVYRNAKXADRSKNDLHERDDGELERTGQPLCIYEPYFGEGSWPFLHQRSLYRGVSLSGRGRRPGRDDFDAPSRLPLLNNAYYRDVLGEHGAFFAIANRIDRLHKNAWIGFXSWRATARKASLSRTAEKALLDAIQSKRYGDALYFWVRMDMDPRNHLQKDFWSFCDAINAGGCKFAFSEAMRRMYGLKDDTEFLPPMPVDGDTWSVMLSWALPTRSFLEFVMFSRMFVDALDAQMYEEHHSTGHCPLSLSKEQHKFKNRRGKMWIKWFSYSTLKSMDEDLAELSDSEDPNRHWLWPSTGEVFWQGVYERERSLRHKEKEKRKQKSLEKLNRMRKRHRQQVIGKYVKPPPEEESSNSSSLLAENLRHYEFKASQS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00172	129542	137015	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009058 biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000172s00014897.2	PF00534.15	Glycos_transf_1	399	496	3.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.192
SRR1783600	control	12.248
SRR1783602	moderate drought stress	10.275
SRR1811619	moderate drought stress	10.268

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.323
DRR006520	Root Summer glycyrrhizin high producing strain	12.530
DRR006521	Root Winter glycyrrhizin high producing strain	5.981
DRR006522	Root Winter glycyrrhizin high producing strain	5.756
DRR006523	Root Summer glycyrrhizin low producing strain	18.624
DRR006524	Root Summer glycyrrhizin low producing strain	18.569
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.813
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.984

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.282
SRR2868004	Drought Stress (root)	28.725
SRR2967015	Control (root)	33.226

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.068
SRR9715740	Leaf	23.946
SRR9715741	Leaf	35.407
SRR9715739	Root	4.658
SRR9715742	Root	32.147
SRR9715743	Root	27.645

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.859
SRR8749028	MeJA induced 9h	13.798
SRR8749029	MeJA induced 9h	8.403
SRR8749030	Uninduced	8.650
SRR8749031	Uninduced	2.401
SRR8749032	Uninduced	2.221

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.384
SRR8400027	Control - Root	30.534