Gene detail

Gene detail information of Glyur000172s00014893

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26500.1	6.00E-98	chloroplast sulfur E
NR	KEH41289.1	1.14E-171	Fe-S metabolism associated protein SufE [Medicago truncatula]
COG	YP_007083200.1	5.00E-38	SufE protein [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q84W65\|SUFE_ARATH	2.00E-134	SufE-like protein, chloroplastic (Precursor)
trEMBL	tr\|A0A072VGX0\|A0A072VGX0_MEDTR	4.00E-172	Fe-S metabolism associated protein SufE {ECO:0000313\|EMBL:KEH41289.1}

Sequence

Transcript Sequence

>Glyur000172s00014893.1
ATGTCTACGAATTCGATTTCCTCCTTTCGATTAGTCACAACCAGAAGAATCCCACTTTCCCTCTACCANAAAAACCCACTCAGCAAAACCCCAACCTTCCTCATACCACCCAGAAAACCCTCCTTCAGACCCATCACCTTCGAGAGAGTTCCAACAAAACCATCATCAGCATCAGCATCATCATCACCATCACCATCATCCACTTCCCTCCAACCCATCGAAGAGCTCCCTCCAAAGCTCCAAGAAATCGTGAAACTCTTCCAATCCGTACAGGGACCCAAGGCCAAGTACGAGCAGCTCCTCTTCTACGGCAAAAACCTCAAACCACTCGAACCCCAATTCAAGAGCAAGGACAACAAGGTCGAGGGTTGTGTCTCCCAGGTTTGGGTCCGAGCCTACCTGGACCGGGAAAGGAACGTCGTCTACGAAGCTGACTCCGACTCAGTCCTCACCAAAGGCCTCGCCGCGCTCCTCGTTCAGGGCTTCTCGGGTCGACCCGTCAACGAAATACTCCGGGTCTCACCCGANTTCGTGACCCAACTCGGGTTGCAACAGAGTTTGACCCCTTCTAGAAACAACGGGTTCTTAAACATGCTCAAATTGATGCAGAAGAAAGCACTCATGCTCTACGTGGAAGCCGAAAAGGGTGCTGCTGAATTTAAAGTTGATACCTTTGTTGAGAATTCAAGTTCAAGTGGTGAAAACAGCTCCCAAATTGAGACCCCAACACCAACACCAAGTTCAGGTGTTGGTTTGAGTTCAGAGGTTGATGATGAGAATGTGGAATTAGGAGGTAGAGGGAGGAGGATCAAGGAGAAGCTTGAGAAGGAGTTGAATCCTGTGGAGTTGCAAGTTGGAGATGTGTCTTATCAGCATGCTGGGCATGCCGGTGCTAGAGGGAGCAATGGTGAGACACATTTCAACCTTAGAGTGGTATCTGAAGAGTTTGAAGGGAAGAGTTTAGTTAAGAGGCACAGGCTCATCTATAACCTGCTGCAAGAGGAGTTGCAGAATGGACTTCATGCCTTGTCAATTGTGGCCAAGACGCCTTCTGAAGTTAGTGAAGGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00172	115398	116468	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000172s00014893.1	PF02657.10	SufE	83	206	4.30E-32
Glyur000172s00014893.1	PF01722.13	BolA	273	352	9.50E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.922
SRR1783600	control	31.627
SRR1783602	moderate drought stress	23.460
SRR1811619	moderate drought stress	21.858

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.584
DRR006520	Root Summer glycyrrhizin high producing strain	36.679
DRR006521	Root Winter glycyrrhizin high producing strain	7.717
DRR006522	Root Winter glycyrrhizin high producing strain	8.632
DRR006523	Root Summer glycyrrhizin low producing strain	30.205
DRR006524	Root Summer glycyrrhizin low producing strain	29.018
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.394
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.902

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.987
SRR2868004	Drought Stress (root)	28.834
SRR2967015	Control (root)	24.141

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	48.756
SRR9715740	Leaf	72.054
SRR9715741	Leaf	51.373
SRR9715739	Root	34.751
SRR9715742	Root	40.198
SRR9715743	Root	35.936

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.907
SRR8749028	MeJA induced 9h	10.544
SRR8749029	MeJA induced 9h	9.557
SRR8749030	Uninduced	8.690
SRR8749031	Uninduced	2.446
SRR8749032	Uninduced	5.075

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.133
SRR8400027	Control - Root	36.203